Variant report

Variant	rs2296932
Chromosome Location	chr6:36895540-36895541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36877418..36880214-chr6:36894760..36897203,2	K562	blood:
2	chr6:36884977..36888283-chr6:36895013..36898238,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1008027	0.85[JPT][hapmap]
rs1046578	0.85[JPT][hapmap]
rs10498736	0.84[ASN][1000 genomes]
rs10947647	0.85[JPT][hapmap]
rs10947649	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11757380	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs11759850	0.86[JPT][hapmap]
rs11963298	0.86[JPT][hapmap]
rs12202755	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs12213912	0.85[JPT][hapmap]
rs13219894	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs13219913	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs2272275	0.85[JPT][hapmap]
rs2293391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2293392	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs3074	0.85[JPT][hapmap]
rs34605868	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs36048521	0.87[ASN][1000 genomes]
rs3734333	0.85[JPT][hapmap]
rs3798469	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs58914000	0.81[ASN][1000 genomes]
rs61054996	0.88[ASN][1000 genomes]
rs6457964	0.85[JPT][hapmap]
rs6901884	0.80[ASN][1000 genomes]
rs6918914	0.88[ASN][1000 genomes]
rs73420397	0.87[ASN][1000 genomes]
rs7743646	0.85[JPT][hapmap]
rs7743836	0.85[JPT][hapmap]
rs7757241	0.84[ASN][1000 genomes]
rs7761653	0.85[JPT][hapmap]
rs7774420	0.85[JPT][hapmap]
rs9296200	0.82[JPT][hapmap]
rs9462232	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs9462234	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs9470422	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs9470440	0.82[CHB][hapmap]
rs9918461	0.90[JPT][hapmap]
rs997674	0.88[CHB][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36866200-36896400	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr6:36867000-36897000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:36877800-36896000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:36880600-36900000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:36881400-36896200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:36882400-36895600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:36882400-36896800	Weak transcription	Hela-S3	cervix
8	chr6:36884800-36901200	Weak transcription	HMEC	breast
9	chr6:36887600-36895600	Weak transcription	Right Atrium	heart
10	chr6:36888400-36895600	Weak transcription	Stomach Mucosa	stomach
11	chr6:36889400-36897400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:36891600-36901800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:36891800-36897800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:36892200-36900600	Weak transcription	HUVEC	blood vessel
15	chr6:36892600-36900800	Weak transcription	NHEK	skin
16	chr6:36892800-36895600	Weak transcription	Gastric	stomach
17	chr6:36892800-36896200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:36892800-36897400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:36892800-36915600	Weak transcription	Pancreas	Pancrea
20	chr6:36893000-36896200	Weak transcription	Spleen	Spleen
21	chr6:36893200-36896800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:36893200-36898000	Weak transcription	Esophagus	oesophagus
23	chr6:36893200-36900600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:36893400-36897800	Weak transcription	Brain Angular Gyrus	brain
25	chr6:36893600-36896000	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:36893600-36897600	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr6:36893600-36906600	Weak transcription	Thymus	Thymus
28	chr6:36893800-36895600	Weak transcription	Lung	lung
29	chr6:36893800-36895600	Weak transcription	Right Ventricle	heart
30	chr6:36893800-36895800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr6:36893800-36896000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr6:36893800-36896600	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr6:36893800-36897200	Weak transcription	Primary B cells from cord blood	blood
34	chr6:36893800-36897400	Weak transcription	K562	blood
35	chr6:36893800-36897600	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:36893800-36897600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:36893800-36898000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:36893800-36898400	Weak transcription	Liver	Liver
39	chr6:36893800-36898600	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr6:36893800-36903800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:36894000-36895600	Weak transcription	Brain Substantia Nigra	brain
42	chr6:36894000-36895800	Weak transcription	Dnd41	blood
43	chr6:36894000-36897400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr6:36894000-36897400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:36894000-36898400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr6:36894000-36898600	Weak transcription	Fetal Brain Female	brain
47	chr6:36894000-36901200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:36894200-36895600	Weak transcription	Left Ventricle	heart
49	chr6:36894200-36897400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr6:36894400-36896800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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