Variant report

Variant	rs2298998
Chromosome Location	chr4:110907156-110907157
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110906589..110909378-chr4:110912788..110915171,2	K562	blood:
2	chr4:110905512..110907567-chr4:110910504..110912580,2	K562	blood:

Variant related genes	Relation type
ENSG00000207260	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10434002	0.89[ASN][1000 genomes]
rs11098052	1.00[AMR][1000 genomes]
rs11568846	1.00[YRI][hapmap]
rs11568886	0.80[ASN][1000 genomes]
rs11568901	0.80[ASN][1000 genomes]
rs11568911	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11568924	0.81[ASN][1000 genomes]
rs11568925	0.81[ASN][1000 genomes]
rs11568927	0.81[ASN][1000 genomes]
rs11568931	1.00[AMR][1000 genomes]
rs11568941	0.83[ASN][1000 genomes]
rs11568946	0.83[ASN][1000 genomes]
rs11568957	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11568975	0.83[ASN][1000 genomes]
rs11568985	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11568990	0.89[ASN][1000 genomes]
rs11568991	0.89[ASN][1000 genomes]
rs11568992	1.00[AMR][1000 genomes]
rs11569003	0.89[ASN][1000 genomes]
rs17041134	0.90[ASN][1000 genomes]
rs2237046	0.89[ASN][1000 genomes]
rs2237047	0.89[ASN][1000 genomes]
rs2237048	0.89[ASN][1000 genomes]
rs2298984	0.81[ASN][1000 genomes]
rs2298987	0.83[ASN][1000 genomes]
rs2298988	0.83[ASN][1000 genomes]
rs2298994	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2298995	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2298997	1.00[ASN][1000 genomes]
rs2302135	0.90[ASN][1000 genomes]
rs3733628	0.83[ASN][1000 genomes]
rs3796942	1.00[ASN][1000 genomes]
rs3796943	1.00[ASN][1000 genomes]
rs3796949	0.80[ASN][1000 genomes]
rs59242631	0.90[ASN][1000 genomes]
rs887027	0.89[ASN][1000 genomes]
rs9307346	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110875600-110909800	Weak transcription	Pancreas	Pancrea
2	chr4:110885800-110909800	Weak transcription	Left Ventricle	heart
3	chr4:110893800-110909600	Weak transcription	Fetal Heart	heart
4	chr4:110895000-110909600	Weak transcription	Fetal Intestine Small	intestine
5	chr4:110895000-110928600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:110899400-110909800	Weak transcription	Right Atrium	heart
7	chr4:110901000-110929600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:110901400-110920800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:110902000-110907200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:110902200-110907600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:110902200-110910200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:110902400-110909400	Weak transcription	NHEK	skin
13	chr4:110902600-110909600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:110902800-110910000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:110903200-110911400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:110905400-110909600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr4:110905600-110909600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr4:110906200-110909200	Enhancers	HSMMtube	muscle
19	chr4:110906600-110907400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:110906600-110907800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr4:110906600-110907800	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr4:110906800-110907800	Enhancers	Brain Germinal Matrix	brain
23	chr4:110906800-110908000	Enhancers	NHDF-Ad	bronchial
24	chr4:110906800-110920800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr4:110907000-110907400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:110907000-110907600	Weak transcription	HSMM	muscle
27	chr4:110907000-110932400	Weak transcription	Psoas Muscle	Psoas

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