Variant report

Variant	rs17041134
Chromosome Location	chr4:110902734-110902735
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10434002	0.94[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs11098058	0.92[CHB][hapmap];0.82[ASN][1000 genomes]
rs11098063	0.81[ASN][1000 genomes]
rs11568853	0.94[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs11568862	0.89[ASN][1000 genomes]
rs11568886	0.89[ASN][1000 genomes]
rs11568901	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11568910	0.84[ASN][1000 genomes]
rs11568924	0.90[ASN][1000 genomes]
rs11568925	0.90[ASN][1000 genomes]
rs11568927	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11568941	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11568946	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11568975	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11568990	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11568991	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11569003	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11569102	0.82[ASN][1000 genomes]
rs11569103	0.82[ASN][1000 genomes]
rs11569129	0.94[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs11569142	0.82[ASN][1000 genomes]
rs17040990	0.83[CHB][hapmap]
rs17041036	0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs1860131	0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs2074389	0.94[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs2237043	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2237046	0.99[ASN][1000 genomes]
rs2237047	0.94[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs2237048	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2282782	0.88[ASN][1000 genomes]
rs2282783	0.89[ASN][1000 genomes]
rs2282786	0.94[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs2298980	0.89[ASN][1000 genomes]
rs2298984	0.90[ASN][1000 genomes]
rs2298987	0.92[ASN][1000 genomes]
rs2298988	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2298994	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2298995	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2298997	0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs2298998	0.90[ASN][1000 genomes]
rs2299002	0.81[ASN][1000 genomes]
rs2302135	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3733628	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3756264	0.82[CHB][hapmap]
rs3796942	0.90[ASN][1000 genomes]
rs3796943	0.93[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs3796949	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3822285	0.94[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs4631111	0.87[ASN][1000 genomes]
rs59242631	1.00[ASN][1000 genomes]
rs887027	0.98[ASN][1000 genomes]
rs9307346	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110860600-110906600	Weak transcription	Psoas Muscle	Psoas
2	chr4:110875600-110909800	Weak transcription	Pancreas	Pancrea
3	chr4:110885800-110909800	Weak transcription	Left Ventricle	heart
4	chr4:110893800-110909600	Weak transcription	Fetal Heart	heart
5	chr4:110895000-110909600	Weak transcription	Fetal Intestine Small	intestine
6	chr4:110895000-110928600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:110898000-110906600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr4:110899400-110909800	Weak transcription	Right Atrium	heart
9	chr4:110899600-110902800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:110900800-110902800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:110900800-110905000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr4:110901000-110905200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr4:110901000-110929600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:110901400-110920800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr4:110901600-110904600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr4:110902000-110906800	Weak transcription	NHDF-Ad	bronchial
17	chr4:110902000-110907200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:110902200-110903800	Weak transcription	HSMMtube	muscle
19	chr4:110902200-110906600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr4:110902200-110907600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:110902200-110910200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:110902400-110902800	Active TSS	NH-A	brain
23	chr4:110902400-110909400	Weak transcription	NHEK	skin
24	chr4:110902600-110903000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:110902600-110903800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr4:110902600-110906800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:110902600-110906800	Weak transcription	HSMM	muscle
28	chr4:110902600-110909600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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