Variant report

Variant	rs17040990
Chromosome Location	chr4:110830617-110830618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11568853	0.91[CHB][hapmap];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11568862	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11568886	0.85[ASN][1000 genomes]
rs11568901	0.91[CHB][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11568910	1.00[AMR][1000 genomes]
rs11568924	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11568925	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11568927	0.91[CHB][hapmap];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11568941	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs11568946	0.92[CHB][hapmap];0.84[ASN][1000 genomes]
rs11568975	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs11568990	0.83[CHB][hapmap]
rs11568991	0.84[CHB][hapmap]
rs11569003	0.84[CHB][hapmap]
rs16997106	1.00[AMR][1000 genomes]
rs17040989	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17041036	0.92[CHB][hapmap];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17041134	0.83[CHB][hapmap]
rs1860131	0.91[CHB][hapmap];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2237043	0.92[CHB][hapmap];0.80[JPT][hapmap];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2237048	0.83[CHB][hapmap]
rs2282782	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2282783	0.86[ASN][1000 genomes]
rs2298980	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2298984	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2298987	0.84[ASN][1000 genomes]
rs2298988	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs2298994	0.83[CHB][hapmap]
rs2298995	0.91[CHB][hapmap]
rs2302135	0.83[CHB][hapmap]
rs3733628	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs3756264	0.83[CHB][hapmap];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3796943	0.81[JPT][hapmap]
rs3796949	0.90[CHB][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4631111	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9307346	0.92[CHB][hapmap];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110825000-110834000	Weak transcription	Psoas Muscle	Psoas
2	chr4:110830400-110833800	Weak transcription	Fetal Lung	lung

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