Variant report

Variant	rs3756264
Chromosome Location	chr4:110831636-110831637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110831007..110832893-chr4:110834036..110836190,2	K562	blood:

Variant related genes	Relation type
ENSG00000138798	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10434002	0.80[ASN][1000 genomes]
rs11568853	0.88[CHB][hapmap];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11568862	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11568886	0.87[ASN][1000 genomes]
rs11568901	0.89[CHB][hapmap];1.00[GIH][hapmap];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11568910	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11568924	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11568925	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11568927	0.89[CHB][hapmap];1.00[GIH][hapmap];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11568941	0.89[CHB][hapmap];0.91[GIH][hapmap];0.86[ASN][1000 genomes]
rs11568946	0.89[CHB][hapmap];0.86[ASN][1000 genomes]
rs11568975	0.89[CHB][hapmap];1.00[GIH][hapmap];0.86[ASN][1000 genomes]
rs11568990	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs11568991	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs11569003	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs16997106	1.00[AMR][1000 genomes]
rs17040989	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17040990	0.83[CHB][hapmap];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17041036	0.89[CHB][hapmap];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17041134	0.82[CHB][hapmap]
rs1860131	0.89[CHB][hapmap];1.00[GIH][hapmap];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2237043	0.89[CHB][hapmap];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2237046	0.80[ASN][1000 genomes]
rs2237048	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs2282782	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2282783	0.89[ASN][1000 genomes]
rs2298980	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2298984	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2298987	0.86[ASN][1000 genomes]
rs2298988	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs2298994	0.83[CHB][hapmap]
rs2298995	0.80[CHB][hapmap]
rs2302135	0.83[CHB][hapmap]
rs3733628	0.89[CHB][hapmap];1.00[GIH][hapmap];0.86[ASN][1000 genomes]
rs3796949	0.88[CHB][hapmap];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4631111	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9307346	0.88[CHB][hapmap];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110825000-110834000	Weak transcription	Psoas Muscle	Psoas
2	chr4:110830400-110833800	Weak transcription	Fetal Lung	lung
3	chr4:110831400-110833000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:110831600-110831800	Enhancers	HepG2	liver
5	chr4:110831600-110834000	Weak transcription	Fetal Intestine Small	intestine

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