Variant report

Variant	rs16997106
Chromosome Location	chr4:110799166-110799167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11568853	1.00[AMR][1000 genomes]
rs11568862	1.00[AMR][1000 genomes]
rs11568901	1.00[AMR][1000 genomes]
rs11568910	1.00[AMR][1000 genomes]
rs11568924	1.00[AMR][1000 genomes]
rs11568925	1.00[AMR][1000 genomes]
rs11568927	1.00[AMR][1000 genomes]
rs16997092	0.97[ASN][1000 genomes]
rs17040961	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17040963	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17040989	1.00[AMR][1000 genomes]
rs17040990	1.00[AMR][1000 genomes]
rs17041036	1.00[AMR][1000 genomes]
rs1860131	1.00[AMR][1000 genomes]
rs2237043	1.00[AMR][1000 genomes]
rs2282782	1.00[AMR][1000 genomes]
rs2298750	1.00[EUR][1000 genomes]
rs2298980	1.00[AMR][1000 genomes]
rs2298984	1.00[AMR][1000 genomes]
rs34855585	0.83[EUR][1000 genomes]
rs3733613	1.00[EUR][1000 genomes]
rs3756264	1.00[AMR][1000 genomes]
rs3796949	1.00[AMR][1000 genomes]
rs4631111	1.00[AMR][1000 genomes]
rs9307346	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110791800-110799600	Weak transcription	Brain Angular Gyrus	brain
2	chr4:110796200-110800200	Weak transcription	Psoas Muscle	Psoas
3	chr4:110796600-110800200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:110797600-110799600	Weak transcription	Pancreas	Pancrea
5	chr4:110798400-110799200	Enhancers	NHEK	skin
6	chr4:110798800-110800200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:110799000-110799200	Enhancers	GM12878-XiMat	blood
8	chr4:110799000-110800200	Weak transcription	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links