Variant report

Variant	rs9307346
Chromosome Location	chr4:110877343-110877344
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:110875646..110878215-chr4:110881372..110883545,2	K562	blood:
2	chr4:110873665..110876586-chr4:110876790..110878901,3	K562	blood:
3	chr4:110872886..110875525-chr4:110876414..110878617,3	K562	blood:

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10000762	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10002835	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10003648	1.00[EUR][1000 genomes]
rs10008969	1.00[CEU][hapmap]
rs10011256	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10015673	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10018671	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10018709	1.00[EUR][1000 genomes]
rs10021246	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10021699	1.00[CEU][hapmap]
rs10023766	1.00[EUR][1000 genomes]
rs10024160	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10025706	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10027781	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10028950	1.00[EUR][1000 genomes]
rs10029493	1.00[EUR][1000 genomes]
rs10029765	1.00[CEU][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10029774	1.00[EUR][1000 genomes]
rs10032001	1.00[EUR][1000 genomes]
rs10034447	1.00[EUR][1000 genomes]
rs10434002	0.88[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs11098058	0.83[CHB][hapmap]
rs11568853	1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11568862	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11568886	0.99[ASN][1000 genomes]
rs11568901	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11568910	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11568924	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11568925	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11568927	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11568941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11568946	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11568975	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11568990	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11568991	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11569003	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11569065	1.00[EUR][1000 genomes]
rs11569129	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs11569134	1.00[EUR][1000 genomes]
rs12331156	1.00[EUR][1000 genomes]
rs12386405	1.00[EUR][1000 genomes]
rs16997106	1.00[AMR][1000 genomes]
rs17040963	1.00[CEU][hapmap]
rs17040989	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17040990	0.92[CHB][hapmap];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17041036	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17041134	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17041311	1.00[CEU][hapmap]
rs17041322	1.00[CEU][hapmap]
rs1860131	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2074389	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs2237043	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2237046	0.91[ASN][1000 genomes]
rs2237047	0.88[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs2237048	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2282782	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2282783	0.98[ASN][1000 genomes]
rs2282786	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs2298980	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2298984	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2298987	0.98[ASN][1000 genomes]
rs2298988	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2298994	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2298995	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2298997	0.87[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs2298998	0.81[ASN][1000 genomes]
rs2302135	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs28372160	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28387677	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28414645	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28419786	1.00[EUR][1000 genomes]
rs28421711	1.00[EUR][1000 genomes]
rs28542074	1.00[EUR][1000 genomes]
rs28553469	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28592692	1.00[EUR][1000 genomes]
rs28599924	1.00[EUR][1000 genomes]
rs28659909	1.00[EUR][1000 genomes]
rs28662394	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28678255	1.00[EUR][1000 genomes]
rs28680960	1.00[EUR][1000 genomes]
rs28684716	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28687523	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28715029	1.00[EUR][1000 genomes]
rs28719677	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28729403	1.00[EUR][1000 genomes]
rs28733095	1.00[EUR][1000 genomes]
rs28780412	1.00[EUR][1000 genomes]
rs28803170	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28888150	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28889289	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28892978	1.00[EUR][1000 genomes]
rs3733628	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3756264	0.88[CHB][hapmap];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3796942	0.81[ASN][1000 genomes]
rs3796943	0.85[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs3796949	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3822285	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs41397647	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41475346	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4631111	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59242631	0.90[ASN][1000 genomes]
rs59590892	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6533490	1.00[EUR][1000 genomes]
rs72896557	1.00[EUR][1000 genomes]
rs72898536	1.00[EUR][1000 genomes]
rs72898540	1.00[EUR][1000 genomes]
rs72898560	1.00[EUR][1000 genomes]
rs7442505	1.00[EUR][1000 genomes]
rs7668395	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7691725	1.00[CEU][hapmap]
rs887027	0.90[ASN][1000 genomes]
rs9990841	1.00[CEU][hapmap]
rs9991664	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9992217	1.00[EUR][1000 genomes]
rs9992709	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9993323	1.00[EUR][1000 genomes]
rs9994891	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110860600-110906600	Weak transcription	Psoas Muscle	Psoas
2	chr4:110869600-110888000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:110872000-110883600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr4:110872000-110885200	Weak transcription	Left Ventricle	heart
5	chr4:110873400-110880200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr4:110874400-110889000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr4:110875600-110909800	Weak transcription	Pancreas	Pancrea
8	chr4:110876200-110879400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:110877000-110880800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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