Variant report

Variant	rs28659909
Chromosome Location	chr4:110752752-110752753
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110750840..110753466-chr4:110761296..110764201,3	K562	blood:
2	chr4:110748139..110750172-chr4:110750209..110753037,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180245	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10000762	1.00[EUR][1000 genomes]
rs10002835	1.00[EUR][1000 genomes]
rs10003648	1.00[EUR][1000 genomes]
rs10011256	1.00[EUR][1000 genomes]
rs10015673	1.00[EUR][1000 genomes]
rs10018671	1.00[EUR][1000 genomes]
rs10018709	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10021246	1.00[EUR][1000 genomes]
rs10024160	1.00[EUR][1000 genomes]
rs10025706	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10027781	1.00[EUR][1000 genomes]
rs10028950	1.00[EUR][1000 genomes]
rs10029493	1.00[EUR][1000 genomes]
rs10029765	1.00[EUR][1000 genomes]
rs10029774	1.00[EUR][1000 genomes]
rs10032001	1.00[EUR][1000 genomes]
rs11569065	1.00[EUR][1000 genomes]
rs11569134	1.00[EUR][1000 genomes]
rs12331156	1.00[EUR][1000 genomes]
rs28372160	1.00[EUR][1000 genomes]
rs28387677	1.00[EUR][1000 genomes]
rs28414645	1.00[EUR][1000 genomes]
rs28419786	1.00[EUR][1000 genomes]
rs28421711	1.00[EUR][1000 genomes]
rs28542074	1.00[EUR][1000 genomes]
rs28553469	1.00[EUR][1000 genomes]
rs28592692	1.00[EUR][1000 genomes]
rs28599924	1.00[EUR][1000 genomes]
rs28662394	1.00[EUR][1000 genomes]
rs28678255	1.00[EUR][1000 genomes]
rs28680960	1.00[EUR][1000 genomes]
rs28684716	1.00[EUR][1000 genomes]
rs28687523	1.00[EUR][1000 genomes]
rs28715029	1.00[EUR][1000 genomes]
rs28719677	1.00[EUR][1000 genomes]
rs28729403	1.00[EUR][1000 genomes]
rs28733095	1.00[EUR][1000 genomes]
rs28780412	1.00[EUR][1000 genomes]
rs28803170	1.00[EUR][1000 genomes]
rs28888150	1.00[EUR][1000 genomes]
rs28889289	1.00[EUR][1000 genomes]
rs28892978	1.00[EUR][1000 genomes]
rs41397647	1.00[EUR][1000 genomes]
rs41475346	1.00[EUR][1000 genomes]
rs59590892	1.00[EUR][1000 genomes]
rs72896557	1.00[EUR][1000 genomes]
rs7442505	1.00[EUR][1000 genomes]
rs7668395	1.00[EUR][1000 genomes]
rs9307346	1.00[EUR][1000 genomes]
rs9991664	1.00[EUR][1000 genomes]
rs9992217	1.00[EUR][1000 genomes]
rs9992709	1.00[EUR][1000 genomes]
rs9993323	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110737600-110770600	Weak transcription	Aorta	Aorta
2	chr4:110737800-110753200	Weak transcription	Lung	lung
3	chr4:110738000-110760800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:110738400-110757200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:110741000-110753000	Weak transcription	Left Ventricle	heart
6	chr4:110742200-110753000	Weak transcription	Fetal Kidney	kidney
7	chr4:110742200-110764400	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:110744000-110759600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:110744400-110774400	Weak transcription	Psoas Muscle	Psoas
10	chr4:110744600-110773200	Weak transcription	Primary T cells from cord blood	blood
11	chr4:110746400-110764000	Weak transcription	Primary B cells from cord blood	blood
12	chr4:110746600-110761200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:110746800-110753000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr4:110746800-110759400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr4:110746800-110767600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:110747000-110754000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:110747000-110754800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr4:110747000-110757600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:110747200-110756400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:110747600-110758400	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr4:110748600-110752800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr4:110749600-110757600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr4:110750400-110753200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:110752600-110753000	Enhancers	Liver	Liver

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