Variant report

Variant	rs28719677
Chromosome Location	chr4:110863819-110863820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10000762	1.00[EUR][1000 genomes]
rs10002835	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10003648	1.00[EUR][1000 genomes]
rs10011256	1.00[EUR][1000 genomes]
rs10015673	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10018671	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10018709	1.00[EUR][1000 genomes]
rs10021246	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10023766	1.00[EUR][1000 genomes]
rs10024160	1.00[EUR][1000 genomes]
rs10025706	1.00[EUR][1000 genomes]
rs10027781	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10028950	1.00[EUR][1000 genomes]
rs10029493	1.00[EUR][1000 genomes]
rs10029765	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10029774	1.00[EUR][1000 genomes]
rs10032001	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10034447	1.00[EUR][1000 genomes]
rs11569065	1.00[EUR][1000 genomes]
rs11569134	1.00[EUR][1000 genomes]
rs12331156	1.00[EUR][1000 genomes]
rs12386405	1.00[EUR][1000 genomes]
rs28372160	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28387677	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28414645	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28419786	1.00[EUR][1000 genomes]
rs28421711	1.00[EUR][1000 genomes]
rs28542074	1.00[EUR][1000 genomes]
rs28553469	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28592692	1.00[EUR][1000 genomes]
rs28599924	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28659909	1.00[EUR][1000 genomes]
rs28662394	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28678255	1.00[EUR][1000 genomes]
rs28680960	1.00[EUR][1000 genomes]
rs28684716	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28687523	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28715029	1.00[EUR][1000 genomes]
rs28729403	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28733095	1.00[EUR][1000 genomes]
rs28780412	1.00[EUR][1000 genomes]
rs28803170	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28888150	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28889289	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28892978	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41397647	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41475346	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59590892	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6533490	1.00[EUR][1000 genomes]
rs72896557	1.00[EUR][1000 genomes]
rs72898536	1.00[EUR][1000 genomes]
rs72898540	1.00[EUR][1000 genomes]
rs72898560	1.00[EUR][1000 genomes]
rs7442505	1.00[EUR][1000 genomes]
rs7668395	1.00[EUR][1000 genomes]
rs9307346	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9991664	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9992217	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9992709	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9993323	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110843000-110876200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:110852400-110873800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:110853800-110871200	Weak transcription	Left Ventricle	heart
4	chr4:110860600-110906600	Weak transcription	Psoas Muscle	Psoas
5	chr4:110860800-110874800	Weak transcription	Pancreas	Pancrea
6	chr4:110863200-110864000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:110863200-110864000	Enhancers	Liver	Liver
8	chr4:110863600-110866200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr4:110863800-110864000	Enhancers	Skeletal Muscle Male	skeletal muscle

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