Variant report

Variant	rs6533490
Chromosome Location	chr4:110966572-110966573
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10002835	1.00[EUR][1000 genomes]
rs10003648	1.00[EUR][1000 genomes]
rs10011256	1.00[EUR][1000 genomes]
rs10015673	1.00[EUR][1000 genomes]
rs10018671	1.00[EUR][1000 genomes]
rs10021246	1.00[EUR][1000 genomes]
rs10023766	1.00[EUR][1000 genomes]
rs10027781	1.00[EUR][1000 genomes]
rs10028950	1.00[EUR][1000 genomes]
rs10029493	1.00[EUR][1000 genomes]
rs10029765	1.00[EUR][1000 genomes]
rs10029774	1.00[EUR][1000 genomes]
rs10032001	1.00[EUR][1000 genomes]
rs10034447	1.00[EUR][1000 genomes]
rs11569065	1.00[EUR][1000 genomes]
rs11569134	1.00[EUR][1000 genomes]
rs12331156	1.00[EUR][1000 genomes]
rs12386405	1.00[EUR][1000 genomes]
rs28372160	1.00[EUR][1000 genomes]
rs28387677	1.00[EUR][1000 genomes]
rs28414645	1.00[EUR][1000 genomes]
rs28553469	1.00[EUR][1000 genomes]
rs28592692	1.00[EUR][1000 genomes]
rs28599924	1.00[EUR][1000 genomes]
rs28662394	1.00[EUR][1000 genomes]
rs28680960	1.00[EUR][1000 genomes]
rs28684716	1.00[EUR][1000 genomes]
rs28687523	1.00[EUR][1000 genomes]
rs28715029	1.00[EUR][1000 genomes]
rs28719677	1.00[EUR][1000 genomes]
rs28729403	1.00[EUR][1000 genomes]
rs28733095	1.00[EUR][1000 genomes]
rs28780412	1.00[EUR][1000 genomes]
rs28803170	1.00[EUR][1000 genomes]
rs28888150	1.00[EUR][1000 genomes]
rs28889289	1.00[EUR][1000 genomes]
rs28892978	1.00[EUR][1000 genomes]
rs41397647	1.00[EUR][1000 genomes]
rs41475346	1.00[EUR][1000 genomes]
rs59590892	1.00[EUR][1000 genomes]
rs72896557	1.00[EUR][1000 genomes]
rs72898536	1.00[EUR][1000 genomes]
rs72898540	1.00[EUR][1000 genomes]
rs72898560	1.00[EUR][1000 genomes]
rs7668395	1.00[EUR][1000 genomes]
rs9307346	1.00[EUR][1000 genomes]
rs9991664	1.00[EUR][1000 genomes]
rs9992217	1.00[EUR][1000 genomes]
rs9992709	1.00[EUR][1000 genomes]
rs9993323	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110958000-110967400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr4:110963400-110972600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr4:110963400-110976200	Weak transcription	Fetal Intestine Large	intestine
4	chr4:110963600-110967200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:110963600-110967600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:110963600-110967800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:110963600-110971000	Weak transcription	Liver	Liver
8	chr4:110963800-110974600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr4:110964600-110967400	Weak transcription	Fetal Lung	lung
10	chr4:110964600-110967600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:110964600-110967600	Weak transcription	Fetal Stomach	stomach
12	chr4:110964600-110967600	Weak transcription	NH-A	brain
13	chr4:110964600-110969400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr4:110964600-110969400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr4:110964600-110971200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr4:110964600-110971200	Weak transcription	Brain Angular Gyrus	brain
17	chr4:110964600-110971200	Weak transcription	HepG2	liver
18	chr4:110964600-110971400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr4:110964600-110972000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr4:110964600-110972000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr4:110964600-110972000	Weak transcription	HSMM	muscle
22	chr4:110964600-110972200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr4:110964600-110975200	Weak transcription	Fetal Heart	heart
24	chr4:110964600-110976600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr4:110964600-110976600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr4:110964600-110981000	Weak transcription	Adipose Nuclei	Adipose
27	chr4:110964600-110981800	Weak transcription	Brain Anterior Caudate	brain
28	chr4:110964600-111004000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr4:110964800-110967200	Weak transcription	Brain Hippocampus Middle	brain
30	chr4:110964800-110969600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr4:110964800-110970200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr4:110964800-110971400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr4:110964800-110976400	Weak transcription	Fetal Kidney	kidney
34	chr4:110964800-110982800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr4:110965000-110966800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:110965000-110967800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr4:110965000-110972200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr4:110965000-110974200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr4:110965000-110982000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr4:110965200-110967200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr4:110965200-110967200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr4:110965200-110976600	Weak transcription	HSMMtube	muscle
43	chr4:110965200-110986600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr4:110965400-110966800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr4:110965400-110967400	Weak transcription	Fetal Thymus	thymus
46	chr4:110965400-110967800	Weak transcription	Brain Germinal Matrix	brain
47	chr4:110965400-110970800	Weak transcription	K562	blood
48	chr4:110965400-110994200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr4:110965600-110967800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr4:110965600-110971600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links