Variant report

Variant	rs72898560
Chromosome Location	chr4:111008767-111008768
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:111008440..111011561-chr4:111115460..111119101,3	K562	blood:
2	chr4:111008615..111010206-chr4:111112826..111114472,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10002835	1.00[EUR][1000 genomes]
rs10015673	1.00[EUR][1000 genomes]
rs10018671	1.00[EUR][1000 genomes]
rs10021246	1.00[EUR][1000 genomes]
rs10023766	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10027781	1.00[EUR][1000 genomes]
rs10029765	1.00[EUR][1000 genomes]
rs10032001	1.00[EUR][1000 genomes]
rs10034447	1.00[EUR][1000 genomes]
rs11569065	1.00[EUR][1000 genomes]
rs11569134	1.00[EUR][1000 genomes]
rs12331156	1.00[EUR][1000 genomes]
rs12386405	1.00[EUR][1000 genomes]
rs28372160	1.00[EUR][1000 genomes]
rs28387677	1.00[EUR][1000 genomes]
rs28414645	1.00[EUR][1000 genomes]
rs28482111	1.00[AFR][1000 genomes]
rs28553469	1.00[EUR][1000 genomes]
rs28592692	1.00[EUR][1000 genomes]
rs28599924	1.00[EUR][1000 genomes]
rs28662394	1.00[EUR][1000 genomes]
rs28680960	1.00[EUR][1000 genomes]
rs28684716	1.00[EUR][1000 genomes]
rs28687523	1.00[EUR][1000 genomes]
rs28715029	1.00[EUR][1000 genomes]
rs28719677	1.00[EUR][1000 genomes]
rs28729403	1.00[EUR][1000 genomes]
rs28780412	1.00[EUR][1000 genomes]
rs28803170	1.00[EUR][1000 genomes]
rs28888150	1.00[EUR][1000 genomes]
rs28889289	1.00[EUR][1000 genomes]
rs28892978	1.00[EUR][1000 genomes]
rs41397647	1.00[EUR][1000 genomes]
rs41475346	1.00[EUR][1000 genomes]
rs59590892	1.00[EUR][1000 genomes]
rs6533490	1.00[EUR][1000 genomes]
rs72896557	1.00[EUR][1000 genomes]
rs72898536	1.00[EUR][1000 genomes]
rs72898540	1.00[EUR][1000 genomes]
rs9307346	1.00[EUR][1000 genomes]
rs9991664	1.00[EUR][1000 genomes]
rs9992217	1.00[EUR][1000 genomes]
rs9992709	1.00[EUR][1000 genomes]
rs9993323	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110973000-111009200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:110981400-111009200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:110986200-111009400	Weak transcription	NHLF	lung
4	chr4:110992400-111010000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:110993200-111015400	Weak transcription	Psoas Muscle	Psoas
6	chr4:110995000-111018600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:111004400-111009600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:111004400-111009600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:111004600-111026000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:111004600-111027800	Weak transcription	Esophagus	oesophagus
11	chr4:111004800-111009800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr4:111005800-111009000	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr4:111006000-111009600	Enhancers	Fetal Intestine Small	intestine
14	chr4:111006000-111010200	Enhancers	Small Intestine	intestine
15	chr4:111006000-111011400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr4:111006000-111013200	Enhancers	Dnd41	blood
17	chr4:111006000-111014000	Enhancers	HMEC	breast
18	chr4:111006200-111009000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:111006200-111009000	Enhancers	Hela-S3	cervix
20	chr4:111006200-111009200	Enhancers	Duodenum Mucosa	Duodenum
21	chr4:111006200-111009600	Enhancers	HUVEC	blood vessel
22	chr4:111006200-111009800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr4:111006200-111012200	Enhancers	NHEK	skin
24	chr4:111006200-111012400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:111006200-111012400	Enhancers	Osteobl	bone
26	chr4:111006200-111012600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr4:111006400-111009000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr4:111006400-111009400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr4:111006400-111010600	Enhancers	Muscle Satellite Cultured Cells	--
30	chr4:111006400-111013000	Weak transcription	Fetal Kidney	kidney
31	chr4:111006600-111009000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr4:111006600-111009200	Weak transcription	Fetal Thymus	thymus
33	chr4:111006600-111009600	Weak transcription	GM12878-XiMat	blood
34	chr4:111006600-111009800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr4:111006600-111012200	Enhancers	NHDF-Ad	bronchial
36	chr4:111006600-111026000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr4:111006800-111009200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr4:111006800-111009200	Weak transcription	Adipose Nuclei	Adipose
39	chr4:111006800-111009200	Weak transcription	Gastric	stomach
40	chr4:111006800-111009800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr4:111006800-111012600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr4:111006800-111014200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr4:111006800-111025800	Weak transcription	Liver	Liver
44	chr4:111007000-111009200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr4:111007000-111009600	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr4:111007000-111010000	Weak transcription	Primary T cells from cord blood	blood
47	chr4:111007000-111010000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr4:111007000-111010200	Enhancers	Brain Germinal Matrix	brain
49	chr4:111007000-111011600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr4:111007200-111009200	Weak transcription	Left Ventricle	heart

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