Variant report

Variant	rs72898540
Chromosome Location	chr4:110991206-110991207
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110989188..110991763-chr4:110992252..110995020,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10002835	1.00[EUR][1000 genomes]
rs10003648	1.00[EUR][1000 genomes]
rs10015673	1.00[EUR][1000 genomes]
rs10018671	1.00[EUR][1000 genomes]
rs10021246	1.00[EUR][1000 genomes]
rs10023766	1.00[EUR][1000 genomes]
rs10027781	1.00[EUR][1000 genomes]
rs10028950	1.00[EUR][1000 genomes]
rs10029493	1.00[EUR][1000 genomes]
rs10029765	1.00[EUR][1000 genomes]
rs10029774	1.00[EUR][1000 genomes]
rs10032001	1.00[EUR][1000 genomes]
rs10034447	1.00[EUR][1000 genomes]
rs11569065	1.00[EUR][1000 genomes]
rs11569134	1.00[EUR][1000 genomes]
rs12331156	1.00[EUR][1000 genomes]
rs12386405	1.00[EUR][1000 genomes]
rs28372160	1.00[EUR][1000 genomes]
rs28387677	1.00[EUR][1000 genomes]
rs28414645	1.00[EUR][1000 genomes]
rs28553469	1.00[EUR][1000 genomes]
rs28592692	1.00[EUR][1000 genomes]
rs28599924	1.00[EUR][1000 genomes]
rs28662394	1.00[EUR][1000 genomes]
rs28680960	1.00[EUR][1000 genomes]
rs28684716	1.00[EUR][1000 genomes]
rs28687523	1.00[EUR][1000 genomes]
rs28715029	1.00[EUR][1000 genomes]
rs28719677	1.00[EUR][1000 genomes]
rs28729403	1.00[EUR][1000 genomes]
rs28733095	1.00[EUR][1000 genomes]
rs28780412	1.00[EUR][1000 genomes]
rs28803170	1.00[EUR][1000 genomes]
rs28888150	1.00[EUR][1000 genomes]
rs28889289	1.00[EUR][1000 genomes]
rs28892978	1.00[EUR][1000 genomes]
rs41397647	1.00[EUR][1000 genomes]
rs41475346	1.00[EUR][1000 genomes]
rs59590892	1.00[EUR][1000 genomes]
rs6533490	1.00[EUR][1000 genomes]
rs72896557	1.00[EUR][1000 genomes]
rs72898536	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72898560	1.00[EUR][1000 genomes]
rs9307346	1.00[EUR][1000 genomes]
rs9991664	1.00[EUR][1000 genomes]
rs9992217	1.00[EUR][1000 genomes]
rs9992709	1.00[EUR][1000 genomes]
rs9993323	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv1798003	chr4:110981611-110996948	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv966478	chr4:110985403-110995212	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110964600-111004000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:110965400-110994200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:110970800-110995800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:110971800-110992800	Weak transcription	Fetal Stomach	stomach
5	chr4:110973000-111009200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:110973400-110992400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:110974600-110992600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:110977200-110992400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:110977200-110992600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:110980200-110992600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr4:110980200-111004000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr4:110981000-110997000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr4:110981000-111004200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:110981400-110992600	Weak transcription	Adipose Nuclei	Adipose
15	chr4:110981400-111006200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:110981400-111009200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr4:110982000-110991800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr4:110982000-110993200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr4:110982000-110994400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:110982000-110994400	Weak transcription	Osteobl	bone
21	chr4:110982000-110995000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:110982000-110995800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr4:110982000-111003800	Weak transcription	NHEK	skin
24	chr4:110982200-110994600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:110982600-110996200	Weak transcription	Dnd41	blood
26	chr4:110984000-110998000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr4:110984000-111006200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr4:110984600-110992600	Weak transcription	Brain Substantia Nigra	brain
29	chr4:110985600-111006000	Weak transcription	Fetal Intestine Small	intestine
30	chr4:110986200-110994000	Weak transcription	Liver	Liver
31	chr4:110986200-111009400	Weak transcription	NHLF	lung
32	chr4:110986800-111006000	Weak transcription	HepG2	liver
33	chr4:110989800-110992000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:110989800-110996000	Weak transcription	HSMM	muscle
35	chr4:110990200-110991800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:110990400-110994800	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr4:110990400-111006400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr4:110990600-110991800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr4:110990600-110994000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr4:110990600-110996400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr4:110990800-110991600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr4:110990800-110993400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr4:110990800-110994800	Weak transcription	Left Ventricle	heart
44	chr4:110991000-110991400	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr4:110991000-110991400	Strong transcription	K562	blood
46	chr4:110991000-110991800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr4:110991000-110994200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr4:110991000-110995000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr4:110991200-110991600	Enhancers	Fetal Heart	heart
50	chr4:110991200-110992600	Weak transcription	Brain Anterior Caudate	brain

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