Variant report

Variant	rs10023766
Chromosome Location	chr4:111005970-111005971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10002835	1.00[EUR][1000 genomes]
rs10015673	1.00[EUR][1000 genomes]
rs10018671	1.00[EUR][1000 genomes]
rs10021246	1.00[EUR][1000 genomes]
rs10027781	1.00[EUR][1000 genomes]
rs10029765	1.00[EUR][1000 genomes]
rs10032001	1.00[EUR][1000 genomes]
rs10034447	1.00[EUR][1000 genomes]
rs11569065	1.00[EUR][1000 genomes]
rs11569134	1.00[EUR][1000 genomes]
rs12331156	1.00[EUR][1000 genomes]
rs12386405	1.00[EUR][1000 genomes]
rs28372160	1.00[EUR][1000 genomes]
rs28387677	1.00[EUR][1000 genomes]
rs28414645	1.00[EUR][1000 genomes]
rs28482111	1.00[AFR][1000 genomes]
rs28553469	1.00[EUR][1000 genomes]
rs28592692	1.00[EUR][1000 genomes]
rs28599924	1.00[EUR][1000 genomes]
rs28662394	1.00[EUR][1000 genomes]
rs28680960	1.00[EUR][1000 genomes]
rs28684716	1.00[EUR][1000 genomes]
rs28687523	1.00[EUR][1000 genomes]
rs28715029	1.00[EUR][1000 genomes]
rs28719677	1.00[EUR][1000 genomes]
rs28729403	1.00[EUR][1000 genomes]
rs28780412	1.00[EUR][1000 genomes]
rs28803170	1.00[EUR][1000 genomes]
rs28888150	1.00[EUR][1000 genomes]
rs28889289	1.00[EUR][1000 genomes]
rs28892978	1.00[EUR][1000 genomes]
rs41397647	1.00[EUR][1000 genomes]
rs41475346	1.00[EUR][1000 genomes]
rs59590892	1.00[EUR][1000 genomes]
rs6533490	1.00[EUR][1000 genomes]
rs72896557	1.00[EUR][1000 genomes]
rs72898536	1.00[EUR][1000 genomes]
rs72898540	1.00[EUR][1000 genomes]
rs72898560	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9307346	1.00[EUR][1000 genomes]
rs9991664	1.00[EUR][1000 genomes]
rs9992217	1.00[EUR][1000 genomes]
rs9992709	1.00[EUR][1000 genomes]
rs9993323	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv437412	chr4:110995217-111006785	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv437414	chr4:110995217-111006785	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv3341709	chr4:111004303-111006876	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3406554	chr4:111004703-111006401	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110973000-111009200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:110981400-111006200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:110981400-111009200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:110984000-111006200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:110985600-111006000	Weak transcription	Fetal Intestine Small	intestine
6	chr4:110986200-111009400	Weak transcription	NHLF	lung
7	chr4:110986800-111006000	Weak transcription	HepG2	liver
8	chr4:110990400-111006400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr4:110991800-111008400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:110992400-111010000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:110993200-111015400	Weak transcription	Psoas Muscle	Psoas
12	chr4:110994800-111006000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr4:110995000-111018600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:110995200-111008600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:110996400-111006200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:110998000-111006000	Weak transcription	K562	blood
17	chr4:110998200-111007800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr4:111003400-111006000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:111004400-111009600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:111004400-111009600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr4:111004600-111006000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr4:111004600-111006000	Weak transcription	Small Intestine	intestine
23	chr4:111004600-111006000	Weak transcription	Dnd41	blood
24	chr4:111004600-111007000	Weak transcription	Brain Germinal Matrix	brain
25	chr4:111004600-111026000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:111004600-111027800	Weak transcription	Esophagus	oesophagus
27	chr4:111004800-111006000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr4:111004800-111006000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr4:111004800-111006200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr4:111004800-111006200	Weak transcription	NHEK	skin
31	chr4:111004800-111009800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr4:111005400-111006000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:111005800-111006600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr4:111005800-111006800	Enhancers	Primary T cells fromperipheralblood	blood
35	chr4:111005800-111006800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:111005800-111009000	Enhancers	Rectal Mucosa Donor 31	rectum

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