Variant report

Variant	rs4631111
Chromosome Location	chr4:110855426-110855427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10434002	0.88[ASN][1000 genomes]
rs11568853	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11568862	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11568886	0.97[ASN][1000 genomes]
rs11568901	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11568910	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11568924	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11568925	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11568927	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11568941	0.94[ASN][1000 genomes]
rs11568946	0.94[ASN][1000 genomes]
rs11568975	0.94[ASN][1000 genomes]
rs11568990	0.88[ASN][1000 genomes]
rs11568991	0.88[ASN][1000 genomes]
rs11569003	0.88[ASN][1000 genomes]
rs16997106	1.00[AMR][1000 genomes]
rs17040989	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17040990	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17041036	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17041134	0.87[ASN][1000 genomes]
rs1860131	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2237043	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2237046	0.88[ASN][1000 genomes]
rs2237047	0.87[ASN][1000 genomes]
rs2237048	0.88[ASN][1000 genomes]
rs2282782	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2282783	0.96[ASN][1000 genomes]
rs2298980	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2298984	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2298987	0.94[ASN][1000 genomes]
rs2298988	0.94[ASN][1000 genomes]
rs2298994	0.87[ASN][1000 genomes]
rs2298995	0.87[ASN][1000 genomes]
rs2302135	0.87[ASN][1000 genomes]
rs3733628	0.94[ASN][1000 genomes]
rs3756264	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3796949	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59242631	0.87[ASN][1000 genomes]
rs887027	0.87[ASN][1000 genomes]
rs9307346	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv1813951	chr4:110840748-110862637	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110843000-110876200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:110852400-110873800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:110853800-110871200	Weak transcription	Left Ventricle	heart

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