Variant report

Variant	rs1860131
Chromosome Location	chr4:110835743-110835744
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10000762	1.00[CEU][hapmap]
rs10008969	1.00[CEU][hapmap]
rs10011256	1.00[CEU][hapmap]
rs10021246	1.00[CEU][hapmap]
rs10021699	1.00[CEU][hapmap]
rs10024160	1.00[CEU][hapmap]
rs10025706	1.00[CEU][hapmap]
rs10029765	1.00[CEU][hapmap]
rs10434002	0.89[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs11098058	0.84[CHB][hapmap]
rs11568853	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11568862	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11568886	0.95[ASN][1000 genomes]
rs11568901	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11568910	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11568924	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11568925	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11568927	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11568941	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs11568946	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs11568975	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs11568990	0.94[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs11568991	0.94[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs11569003	0.94[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs11569129	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs16997106	1.00[AMR][1000 genomes]
rs17040963	1.00[CEU][hapmap]
rs17040989	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17040990	0.91[CHB][hapmap];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17041036	1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17041134	0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs17041311	1.00[CEU][hapmap]
rs17041322	1.00[CEU][hapmap]
rs2074389	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs2237043	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2237046	0.88[ASN][1000 genomes]
rs2237047	0.89[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs2237048	0.94[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs2282782	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2282783	0.96[ASN][1000 genomes]
rs2282786	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs2298980	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2298984	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2298987	0.94[ASN][1000 genomes]
rs2298988	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs2298994	0.94[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs2298995	0.93[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs2298997	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs2302135	0.94[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs3733628	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs3756264	0.89[CHB][hapmap];1.00[GIH][hapmap];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3796943	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs3796949	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3822285	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs4631111	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs59242631	0.87[ASN][1000 genomes]
rs7668395	1.00[CEU][hapmap]
rs7691725	1.00[CEU][hapmap]
rs887027	0.87[ASN][1000 genomes]
rs9307346	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9990841	1.00[CEU][hapmap]
rs9994891	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110832800-110836200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:110833600-110836000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:110833600-110838000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:110833800-110835800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr4:110833800-110835800	Active TSS	Right Ventricle	heart
6	chr4:110833800-110836000	Active TSS	Left Ventricle	heart
7	chr4:110833800-110836000	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr4:110833800-110836400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr4:110833800-110836400	Active TSS	Right Atrium	heart
10	chr4:110833800-110836400	Active TSS	HSMMtube	muscle
11	chr4:110833800-110837600	Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr4:110834000-110835800	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr4:110834000-110837200	Active TSS	Pancreas	Pancrea
14	chr4:110834000-110837400	Active TSS	Psoas Muscle	Psoas
15	chr4:110834000-110838400	Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr4:110834200-110835800	Active TSS	Fetal Intestine Large	intestine
17	chr4:110834200-110836600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr4:110834200-110837000	Active TSS	Fetal Muscle Trunk	muscle
19	chr4:110834200-110837200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:110834400-110844800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr4:110834600-110835800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:110834600-110836400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr4:110834600-110836400	Weak transcription	A549	lung
24	chr4:110834600-110836600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr4:110834600-110837200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:110834600-110841800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:110834800-110835800	Active TSS	HUES6 Cell Line	embryonic stem cell
28	chr4:110834800-110835800	Flanking Active TSS	Fetal Heart	heart
29	chr4:110834800-110837400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr4:110835200-110842200	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr4:110835400-110835800	Enhancers	Colonic Mucosa	Colon
32	chr4:110835400-110835800	Active TSS	Rectal Mucosa Donor 31	rectum
33	chr4:110835400-110836200	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr4:110835400-110836200	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr4:110835400-110836400	Weak transcription	K562	blood
36	chr4:110835400-110837400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr4:110835600-110835800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr4:110835600-110835800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr4:110835600-110835800	Enhancers	Primary hematopoietic stem cells	blood
40	chr4:110835600-110835800	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr4:110835600-110835800	Active TSS	Fetal Intestine Small	intestine
42	chr4:110835600-110836000	Enhancers	Duodenum Mucosa	Duodenum
43	chr4:110835600-110836600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr4:110835600-110836800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr4:110835600-110837000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr4:110835600-110837000	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links