Variant report

Variant	rs9994891
Chromosome Location	chr4:110791453-110791454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10000762	1.00[CEU][hapmap]
rs10008969	1.00[CEU][hapmap]
rs10011256	1.00[CEU][hapmap]
rs10021246	1.00[CEU][hapmap]
rs10021699	1.00[CEU][hapmap]
rs10024160	1.00[CEU][hapmap]
rs10025706	1.00[CEU][hapmap]
rs10029765	1.00[CEU][hapmap]
rs17040963	1.00[CEU][hapmap]
rs17041311	1.00[CEU][hapmap]
rs17041322	1.00[CEU][hapmap]
rs1860131	1.00[CEU][hapmap]
rs6533467	1.00[MEX][hapmap]
rs6828254	1.00[MEX][hapmap]
rs7668395	1.00[CEU][hapmap]
rs7681770	1.00[MEX][hapmap]
rs7691725	1.00[CEU][hapmap]
rs9307346	1.00[CEU][hapmap]
rs9990841	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110780400-110795000	Weak transcription	Esophagus	oesophagus
2	chr4:110786200-110796600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:110789600-110794800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:110789600-110795800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:110789800-110792400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:110789800-110793600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:110789800-110798400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr4:110790000-110792600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:110790400-110792800	Weak transcription	Brain Hippocampus Middle	brain
10	chr4:110790600-110791600	ZNF genes & repeats	Brain Substantia Nigra	brain
11	chr4:110790600-110791600	Strong transcription	Stomach Smooth Muscle	stomach
12	chr4:110790600-110791800	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr4:110790600-110792000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:110790800-110791600	Strong transcription	Adipose Nuclei	Adipose
15	chr4:110790800-110791600	Strong transcription	Aorta	Aorta
16	chr4:110790800-110791600	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr4:110790800-110791800	Strong transcription	Brain Angular Gyrus	brain
18	chr4:110791000-110791800	Strong transcription	Primary T cells from cord blood	blood
19	chr4:110791200-110791800	Strong transcription	Brain Inferior Temporal Lobe	brain
20	chr4:110791200-110791800	Strong transcription	Gastric	stomach
21	chr4:110791200-110791800	ZNF genes & repeats	Lung	lung
22	chr4:110791400-110793800	Weak transcription	Pancreas	Pancrea

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