Variant report

Variant	rs11098063
Chromosome Location	chr4:110941802-110941803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10434002	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs11098058	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11568853	0.88[CHB][hapmap]
rs11568901	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs11568927	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs11568941	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs11568946	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs11568975	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs11568990	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs11568991	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs11569003	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs11569102	0.99[ASN][1000 genomes]
rs11569103	0.99[ASN][1000 genomes]
rs11569129	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11569142	0.99[ASN][1000 genomes]
rs12507356	0.82[GIH][hapmap]
rs17041036	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs17041134	0.94[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1860131	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs2074389	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2237043	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs2237047	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs2237048	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs2282786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2298988	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs2298994	0.94[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs2298995	0.93[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs2298997	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs2299002	0.98[ASN][1000 genomes]
rs2302135	0.94[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs3733627	0.82[GIH][hapmap]
rs3733628	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs3796943	0.86[CHB][hapmap]
rs3796949	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs3822285	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3822286	0.82[GIH][hapmap]
rs59242631	0.81[ASN][1000 genomes]
rs9307346	0.88[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763384	chr4:110939666-110942596	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110941000-110942000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:110941000-110942200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:110941000-110942400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:110941000-110942600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:110941200-110942000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr4:110941200-110942000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr4:110941200-110942200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:110941200-110942400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:110941200-110942600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:110941400-110942400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr4:110941600-110942400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:110941600-110942400	Enhancers	HSMMtube	muscle
13	chr4:110941600-110942800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr4:110941600-110943000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:110941800-110942400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr4:110941800-110943000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:110941800-110945400	Weak transcription	Brain Germinal Matrix	brain
18	chr4:110941800-110946200	Weak transcription	Fetal Lung	lung

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