Variant report

Variant	rs2299426
Chromosome Location	chr7:107046297-107046298
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107045595..107047319-chr7:107047624..107049995,2	MCF-7	breast:
2	chr7:107040494..107042085-chr7:107043869..107046355,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10215868	0.93[ASN][1000 genomes]
rs10229063	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs10240677	1.00[ASN][1000 genomes]
rs10254184	0.85[JPT][hapmap]
rs10261001	0.80[AFR][1000 genomes]
rs10262523	1.00[ASN][1000 genomes]
rs10262727	0.81[JPT][hapmap]
rs10270528	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2237669	0.93[ASN][1000 genomes]
rs2299429	0.86[JPT][hapmap]
rs3801951	0.85[JPT][hapmap]
rs3801957	0.80[JPT][hapmap]
rs59925720	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	esv1825788	chr7:106897237-107136320	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1024793	chr7:106900877-107170312	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv608073	chr7:106960515-107063686	Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv1832266	chr7:106961882-107136320	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
7	nsv1019963	chr7:107033342-107188641	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv539052	chr7:107033342-107188641	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107001400-107053600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:107003800-107048400	Weak transcription	Dnd41	blood
3	chr7:107003800-107050200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr7:107008400-107048200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:107022200-107053000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:107027400-107053400	Weak transcription	Gastric	stomach
7	chr7:107027800-107047200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr7:107027800-107050200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr7:107027800-107086800	Weak transcription	Aorta	Aorta
10	chr7:107028000-107052800	Weak transcription	Fetal Muscle Leg	muscle
11	chr7:107028000-107054400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:107028200-107053000	Weak transcription	Fetal Stomach	stomach
13	chr7:107028200-107082400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr7:107028200-107103800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:107028800-107053000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:107028800-107053200	Weak transcription	K562	blood
17	chr7:107029400-107050400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:107030200-107049000	Weak transcription	Right Ventricle	heart
19	chr7:107031600-107069600	Weak transcription	Fetal Kidney	kidney
20	chr7:107031800-107050200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:107032000-107050200	Weak transcription	Fetal Intestine Large	intestine
22	chr7:107032400-107068000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr7:107033800-107069800	Weak transcription	Small Intestine	intestine
24	chr7:107034000-107055600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr7:107035800-107052800	Weak transcription	HSMMtube	muscle
26	chr7:107035800-107133000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr7:107036000-107050800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr7:107036200-107051000	Weak transcription	Liver	Liver
29	chr7:107036600-107050200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr7:107036800-107069800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr7:107037000-107053200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr7:107037000-107069800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr7:107037800-107102200	Weak transcription	Ovary	ovary
34	chr7:107038000-107054000	Weak transcription	Fetal Heart	heart
35	chr7:107038200-107069600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr7:107038600-107046400	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr7:107038800-107100600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr7:107039000-107050600	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr7:107039000-107068000	Weak transcription	Lung	lung
40	chr7:107039200-107050600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr7:107040200-107048200	Weak transcription	Primary B cells from cord blood	blood
42	chr7:107040200-107050200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr7:107040200-107050200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr7:107040200-107051400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:107040200-107069800	Weak transcription	Fetal Intestine Small	intestine
46	chr7:107041000-107070000	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr7:107041200-107053000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr7:107042400-107053800	Weak transcription	Colon Smooth Muscle	Colon
49	chr7:107042800-107048600	Weak transcription	Primary T cells from cord blood	blood
50	chr7:107044400-107065200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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