Variant report

Variant	rs10262727
Chromosome Location	chr7:106878673-106878674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:106877913..106879800-chr7:106888048..106890401,2	K562	blood:
2	chr7:106872239..106874201-chr7:106876905..106879195,2	K562	blood:
3	chr7:106808816..106810997-chr7:106877268..106879642,2	K562	blood:

Variant related genes	Relation type
ENSG00000105856	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10228388	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10240677	0.87[EUR][1000 genomes]
rs10241552	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10244682	0.84[ASN][1000 genomes]
rs10247638	0.98[ASN][1000 genomes]
rs10247870	0.87[ASN][1000 genomes]
rs10251350	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10260092	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10261001	0.85[ASN][1000 genomes]
rs17154063	0.81[EUR][1000 genomes]
rs2237664	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28799407	0.93[ASN][1000 genomes]
rs3801957	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs60581555	0.89[EUR][1000 genomes]
rs61557716	0.87[ASN][1000 genomes]
rs67183972	0.81[EUR][1000 genomes]
rs67485259	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67674952	0.81[EUR][1000 genomes]
rs67693230	0.81[EUR][1000 genomes]
rs67752575	0.89[EUR][1000 genomes]
rs6952188	1.00[CEU][hapmap]
rs6977966	0.81[EUR][1000 genomes]
rs73187335	0.85[EUR][1000 genomes]
rs73187346	0.81[EUR][1000 genomes]
rs73187347	0.81[EUR][1000 genomes]
rs73187349	0.81[EUR][1000 genomes]
rs73187350	0.87[EUR][1000 genomes]
rs73187352	0.81[EUR][1000 genomes]
rs73187359	0.81[EUR][1000 genomes]
rs73187360	0.81[EUR][1000 genomes]
rs73187362	0.81[EUR][1000 genomes]
rs73187364	0.81[EUR][1000 genomes]
rs9918725	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv888939	chr7:106849393-107045700	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2756226	chr7:106850755-106944563	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106844600-106880400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr7:106844600-106888400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:106846000-106925800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr7:106850400-106890000	Weak transcription	Hela-S3	cervix
5	chr7:106850800-106895200	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:106851000-106897600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr7:106851000-106946000	Weak transcription	Esophagus	oesophagus
8	chr7:106851200-106882200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:106851200-106888200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr7:106851200-106892400	Weak transcription	Gastric	stomach
11	chr7:106851200-106892600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr7:106853400-106925600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr7:106855600-106883000	Weak transcription	Dnd41	blood
14	chr7:106860200-106882600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr7:106863800-106887400	Weak transcription	Thymus	Thymus
16	chr7:106864000-106889600	Weak transcription	Spleen	Spleen
17	chr7:106865000-106887000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr7:106865200-106884400	Weak transcription	Fetal Muscle Leg	muscle
19	chr7:106865400-106884400	Weak transcription	Fetal Thymus	thymus
20	chr7:106865600-106888200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr7:106865600-106890600	Weak transcription	Aorta	Aorta
22	chr7:106865600-106892400	Weak transcription	HepG2	liver
23	chr7:106865800-106882600	Weak transcription	Lung	lung
24	chr7:106866000-106879000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr7:106866600-106882400	Weak transcription	Fetal Stomach	stomach
26	chr7:106866600-106909600	Weak transcription	Placenta	Placenta
27	chr7:106866800-106884600	Weak transcription	Liver	Liver
28	chr7:106867000-106888000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr7:106867800-106884400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:106867800-106884600	Weak transcription	Adipose Nuclei	Adipose
31	chr7:106867800-106889800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr7:106868400-106883000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr7:106870800-106887600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr7:106871200-106882000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr7:106871400-106884800	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr7:106871600-106889800	Weak transcription	NHDF-Ad	bronchial
37	chr7:106872000-106889800	Weak transcription	Fetal Lung	lung
38	chr7:106873800-106882400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr7:106873800-106882400	Weak transcription	Right Ventricle	heart
40	chr7:106874000-106884200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr7:106874000-106888200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr7:106874000-106888200	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr7:106874000-106890200	Weak transcription	GM12878-XiMat	blood
44	chr7:106874000-106917800	Weak transcription	Osteobl	bone
45	chr7:106874000-106922600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr7:106874000-106929200	Weak transcription	NH-A	brain
47	chr7:106874000-106945600	Weak transcription	Pancreas	Pancrea
48	chr7:106874200-106884200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr7:106874400-106879000	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr7:106874600-106879000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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