Variant report

Variant	rs60581555
Chromosome Location	chr7:106895556-106895557
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr7:106894900-106895586	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:106893843..106895798-chr7:107222460..107225695,3	K562	blood:

Variant related genes	Relation type
COG5	TF binding region
ENSG00000075790	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10228388	0.89[EUR][1000 genomes]
rs10240677	0.84[EUR][1000 genomes]
rs10241552	0.81[EUR][1000 genomes]
rs10251350	0.81[EUR][1000 genomes]
rs10260092	0.81[EUR][1000 genomes]
rs10262727	0.89[EUR][1000 genomes]
rs17154063	0.91[EUR][1000 genomes]
rs2237664	0.91[EUR][1000 genomes]
rs34087251	0.84[EUR][1000 genomes]
rs59650342	0.86[EUR][1000 genomes]
rs67183972	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67485259	0.81[EUR][1000 genomes]
rs67674952	0.91[EUR][1000 genomes]
rs67693230	0.91[EUR][1000 genomes]
rs67752575	1.00[EUR][1000 genomes]
rs6952188	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6977966	0.91[EUR][1000 genomes]
rs73187325	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73187332	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73187335	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73187346	0.91[EUR][1000 genomes]
rs73187347	0.91[EUR][1000 genomes]
rs73187349	0.91[EUR][1000 genomes]
rs73187350	0.84[EUR][1000 genomes]
rs73187352	0.91[EUR][1000 genomes]
rs73187359	0.91[EUR][1000 genomes]
rs73187360	0.91[EUR][1000 genomes]
rs73187362	0.91[EUR][1000 genomes]
rs73187364	0.91[EUR][1000 genomes]
rs73187367	0.86[EUR][1000 genomes]
rs73187370	0.86[EUR][1000 genomes]
rs73415412	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7786360	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv888939	chr7:106849393-107045700	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2756226	chr7:106850755-106944563	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv1016691	chr7:106880953-106960515	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1015615	chr7:106888529-106962332	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106846000-106925800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr7:106851000-106897600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr7:106851000-106946000	Weak transcription	Esophagus	oesophagus
4	chr7:106853400-106925600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr7:106866600-106909600	Weak transcription	Placenta	Placenta
6	chr7:106874000-106917800	Weak transcription	Osteobl	bone
7	chr7:106874000-106922600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr7:106874000-106929200	Weak transcription	NH-A	brain
9	chr7:106874000-106945600	Weak transcription	Pancreas	Pancrea
10	chr7:106875400-106908000	Weak transcription	HMEC	breast
11	chr7:106875600-106898400	Weak transcription	HUVEC	blood vessel
12	chr7:106881200-106895600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:106883000-106918800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:106883400-106910200	Weak transcription	Lung	lung
15	chr7:106883400-106911400	Weak transcription	Right Ventricle	heart
16	chr7:106885000-106897800	Weak transcription	Fetal Thymus	thymus
17	chr7:106885400-106897000	Weak transcription	NHEK	skin
18	chr7:106886400-106971400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr7:106886800-106946000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr7:106887000-106935800	Weak transcription	Small Intestine	intestine
21	chr7:106887400-106898200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:106887600-106910200	Weak transcription	Adipose Nuclei	Adipose
23	chr7:106887600-106910400	Weak transcription	Psoas Muscle	Psoas
24	chr7:106887800-106903000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr7:106888400-106900600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr7:106888600-106899000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:106888600-106910000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr7:106888600-106926600	Weak transcription	Ovary	ovary
29	chr7:106888600-106930800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr7:106888600-106931600	Weak transcription	Dnd41	blood
31	chr7:106888800-106897600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr7:106888800-106910200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr7:106888800-106910200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr7:106888800-106910200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr7:106888800-106911400	Weak transcription	Fetal Intestine Small	intestine
36	chr7:106888800-106913200	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr7:106888800-106917400	Weak transcription	HSMM	muscle
38	chr7:106888800-106930800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:106888800-106932000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr7:106888800-106933400	Weak transcription	Fetal Stomach	stomach
41	chr7:106888800-106946000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr7:106888800-106946200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr7:106888800-106999400	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr7:106889000-106900800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr7:106889000-106902600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr7:106889000-106910200	Weak transcription	Fetal Muscle Leg	muscle
47	chr7:106889000-106933400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr7:106889000-106934400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr7:106889200-106898800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr7:106889200-106910200	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links