Variant report

Variant	rs73187325
Chromosome Location	chr7:106865320-106865321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:106863033..106865746-chr7:107382552..107385425,2	MCF-7	breast:
2	chr7:106817268..106819848-chr7:106864342..106867128,2	MCF-7	breast:
3	chr7:106860422..106863140-chr7:106865241..106868152,2	K562	blood:
4	chr7:106860782..106863137-chr7:106864008..106865595,2	K562	blood:

Variant related genes	Relation type
ENSG00000241764	Chromatin interaction
ENSG00000105879	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs60581555	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67183972	1.00[AMR][1000 genomes]
rs67752575	0.86[EUR][1000 genomes]
rs6952188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73187319	0.81[EUR][1000 genomes]
rs73187332	0.83[AMR][1000 genomes]
rs73187335	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73415412	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv888939	chr7:106849393-107045700	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv2756226	chr7:106850755-106944563	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106844000-106870400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:106844200-106873200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:106844600-106873600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:106844600-106880400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:106844600-106888400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:106846000-106925800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr7:106846200-106870600	Weak transcription	NH-A	brain
8	chr7:106849000-106873200	Weak transcription	Brain Anterior Caudate	brain
9	chr7:106849200-106867800	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:106849200-106872600	Weak transcription	HSMM	muscle
11	chr7:106850400-106890000	Weak transcription	Hela-S3	cervix
12	chr7:106850800-106865400	Weak transcription	Fetal Lung	lung
13	chr7:106850800-106869000	Weak transcription	NHEK	skin
14	chr7:106850800-106871000	Weak transcription	HMEC	breast
15	chr7:106850800-106895200	Weak transcription	Colon Smooth Muscle	Colon
16	chr7:106851000-106873600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:106851000-106897600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr7:106851000-106946000	Weak transcription	Esophagus	oesophagus
19	chr7:106851200-106865400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:106851200-106866000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr7:106851200-106869200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr7:106851200-106869200	Weak transcription	Osteobl	bone
23	chr7:106851200-106873200	Weak transcription	Pancreas	Pancrea
24	chr7:106851200-106874800	Weak transcription	Ovary	ovary
25	chr7:106851200-106882200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr7:106851200-106888200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr7:106851200-106892400	Weak transcription	Gastric	stomach
28	chr7:106851200-106892600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr7:106851400-106870600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr7:106851400-106873200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:106851600-106866200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr7:106851600-106871400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr7:106851800-106866800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr7:106853400-106925600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr7:106854400-106868400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr7:106854400-106878000	Weak transcription	K562	blood
37	chr7:106854800-106867400	Weak transcription	Primary B cells from cord blood	blood
38	chr7:106855200-106873600	Weak transcription	Right Ventricle	heart
39	chr7:106855400-106866600	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr7:106855600-106883000	Weak transcription	Dnd41	blood
41	chr7:106855800-106865600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr7:106856000-106866600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr7:106856400-106865400	Weak transcription	Fetal Intestine Large	intestine
44	chr7:106857200-106877000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr7:106860000-106866400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr7:106860200-106882600	Weak transcription	Fetal Muscle Trunk	muscle
47	chr7:106861200-106865800	Enhancers	Fetal Heart	heart
48	chr7:106861400-106873200	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr7:106861600-106876200	Weak transcription	Fetal Brain Female	brain
50	chr7:106862400-106867600	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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