Variant report

Variant	rs73415412
Chromosome Location	chr7:106852630-106852631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:106849228..106851031-chr7:106852339..106854731,2	MCF-7	breast:
2	chr7:106842331..106847255-chr7:106851023..106853343,4	K562	blood:
3	chr7:106807878..106810234-chr7:106851655..106854013,2	K562	blood:
4	chr7:106850452..106852711-chr7:106857094..106858643,3	K562	blood:
5	chr7:106807584..106809378-chr7:106851655..106853238,2	K562	blood:

Variant related genes	Relation type
ENSG00000105856	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs60581555	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67183972	1.00[AMR][1000 genomes]
rs67752575	0.86[EUR][1000 genomes]
rs6952188	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73187319	0.81[EUR][1000 genomes]
rs73187325	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73187332	0.83[AMR][1000 genomes]
rs73187335	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv888939	chr7:106849393-107045700	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv2756226	chr7:106850755-106944563	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106821000-106854600	Strong transcription	Primary T cells from cord blood	blood
2	chr7:106838200-106865200	Weak transcription	Stomach Mucosa	stomach
3	chr7:106840000-106853400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:106841200-106853000	Weak transcription	Small Intestine	intestine
5	chr7:106841600-106855000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr7:106844000-106870400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr7:106844200-106873200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:106844600-106853800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr7:106844600-106873600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:106844600-106880400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr7:106844600-106888400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:106846000-106925800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr7:106846200-106870600	Weak transcription	NH-A	brain
14	chr7:106846400-106853400	Weak transcription	Brain Germinal Matrix	brain
15	chr7:106846400-106862400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:106848400-106853200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr7:106848800-106854000	Weak transcription	Fetal Brain Female	brain
18	chr7:106849000-106873200	Weak transcription	Brain Anterior Caudate	brain
19	chr7:106849200-106867800	Weak transcription	Brain Hippocampus Middle	brain
20	chr7:106849200-106872600	Weak transcription	HSMM	muscle
21	chr7:106849400-106853400	Weak transcription	Right Atrium	heart
22	chr7:106849600-106853800	Weak transcription	Placenta	Placenta
23	chr7:106849800-106853800	Weak transcription	Psoas Muscle	Psoas
24	chr7:106850200-106853800	Weak transcription	NHLF	lung
25	chr7:106850400-106890000	Weak transcription	Hela-S3	cervix
26	chr7:106850600-106853400	Weak transcription	Right Ventricle	heart
27	chr7:106850600-106860600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr7:106850800-106854200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr7:106850800-106865400	Weak transcription	Fetal Lung	lung
30	chr7:106850800-106869000	Weak transcription	NHEK	skin
31	chr7:106850800-106871000	Weak transcription	HMEC	breast
32	chr7:106850800-106895200	Weak transcription	Colon Smooth Muscle	Colon
33	chr7:106851000-106852800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr7:106851000-106852800	Weak transcription	Brain Substantia Nigra	brain
35	chr7:106851000-106853000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr7:106851000-106853000	Weak transcription	Fetal Kidney	kidney
37	chr7:106851000-106853200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr7:106851000-106853600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:106851000-106853800	Weak transcription	Thymus	Thymus
40	chr7:106851000-106854200	Weak transcription	HSMMtube	muscle
41	chr7:106851000-106861000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr7:106851000-106864600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr7:106851000-106864800	Weak transcription	Aorta	Aorta
44	chr7:106851000-106865000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr7:106851000-106865000	Weak transcription	HepG2	liver
46	chr7:106851000-106865200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr7:106851000-106873600	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr7:106851000-106897600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr7:106851000-106946000	Weak transcription	Esophagus	oesophagus
50	chr7:106851200-106852800	Weak transcription	Primary B cells from cord blood	blood

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