Variant report

Variant	rs73187332
Chromosome Location	chr7:106888150-106888151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:106877913..106879800-chr7:106888048..106890401,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs60581555	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67183972	0.83[AMR][1000 genomes]
rs67752575	0.81[EUR][1000 genomes]
rs6952188	0.83[AMR][1000 genomes]
rs73187319	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73187325	0.83[AMR][1000 genomes]
rs73187335	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73187361	0.80[EUR][1000 genomes]
rs73187377	0.81[EUR][1000 genomes]
rs73415412	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv888939	chr7:106849393-107045700	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2756226	chr7:106850755-106944563	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv1016691	chr7:106880953-106960515	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106844600-106888400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:106846000-106925800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr7:106850400-106890000	Weak transcription	Hela-S3	cervix
4	chr7:106850800-106895200	Weak transcription	Colon Smooth Muscle	Colon
5	chr7:106851000-106897600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr7:106851000-106946000	Weak transcription	Esophagus	oesophagus
7	chr7:106851200-106888200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr7:106851200-106892400	Weak transcription	Gastric	stomach
9	chr7:106851200-106892600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr7:106853400-106925600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr7:106864000-106889600	Weak transcription	Spleen	Spleen
12	chr7:106865600-106888200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:106865600-106890600	Weak transcription	Aorta	Aorta
14	chr7:106865600-106892400	Weak transcription	HepG2	liver
15	chr7:106866600-106909600	Weak transcription	Placenta	Placenta
16	chr7:106867800-106889800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr7:106871600-106889800	Weak transcription	NHDF-Ad	bronchial
18	chr7:106872000-106889800	Weak transcription	Fetal Lung	lung
19	chr7:106874000-106888200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr7:106874000-106888200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr7:106874000-106890200	Weak transcription	GM12878-XiMat	blood
22	chr7:106874000-106917800	Weak transcription	Osteobl	bone
23	chr7:106874000-106922600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr7:106874000-106929200	Weak transcription	NH-A	brain
25	chr7:106874000-106945600	Weak transcription	Pancreas	Pancrea
26	chr7:106875000-106888200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr7:106875000-106889200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr7:106875000-106890600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr7:106875400-106908000	Weak transcription	HMEC	breast
30	chr7:106875600-106898400	Weak transcription	HUVEC	blood vessel
31	chr7:106876600-106890000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr7:106878200-106888200	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr7:106878800-106895000	Weak transcription	K562	blood
34	chr7:106881200-106895600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr7:106882400-106890000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr7:106882600-106889200	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr7:106883000-106918800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr7:106883400-106910200	Weak transcription	Lung	lung
39	chr7:106883400-106911400	Weak transcription	Right Ventricle	heart
40	chr7:106883600-106894200	Weak transcription	Fetal Heart	heart
41	chr7:106884000-106888800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
42	chr7:106884200-106889800	Weak transcription	A549	lung
43	chr7:106884200-106890600	Weak transcription	Stomach Mucosa	stomach
44	chr7:106884600-106888800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr7:106884600-106889200	Strong transcription	Liver	Liver
46	chr7:106884800-106888600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr7:106884800-106889000	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr7:106884800-106890800	Strong transcription	Primary T cells from cord blood	blood
49	chr7:106884800-106892600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr7:106885000-106888200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links