Variant report

Variant	rs67752575
Chromosome Location	chr7:106890651-106890652
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:106890607..106892740-chr7:106903344..106904868,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10228388	0.89[EUR][1000 genomes]
rs10240677	0.84[EUR][1000 genomes]
rs10241552	0.81[EUR][1000 genomes]
rs10251350	0.81[EUR][1000 genomes]
rs10260092	0.81[EUR][1000 genomes]
rs10262727	0.89[EUR][1000 genomes]
rs17154063	0.91[EUR][1000 genomes]
rs2237664	0.91[EUR][1000 genomes]
rs34087251	0.84[EUR][1000 genomes]
rs59650342	0.86[EUR][1000 genomes]
rs60581555	1.00[EUR][1000 genomes]
rs67183972	0.91[EUR][1000 genomes]
rs67485259	0.81[EUR][1000 genomes]
rs67674952	0.91[EUR][1000 genomes]
rs67693230	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6952188	0.86[EUR][1000 genomes]
rs6977966	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73187325	0.86[EUR][1000 genomes]
rs73187332	0.81[EUR][1000 genomes]
rs73187335	0.95[EUR][1000 genomes]
rs73187346	0.91[EUR][1000 genomes]
rs73187347	0.91[EUR][1000 genomes]
rs73187349	0.91[EUR][1000 genomes]
rs73187350	0.84[EUR][1000 genomes]
rs73187352	0.91[EUR][1000 genomes]
rs73187359	0.91[EUR][1000 genomes]
rs73187360	0.91[EUR][1000 genomes]
rs73187362	0.91[EUR][1000 genomes]
rs73187364	0.91[EUR][1000 genomes]
rs73187367	0.86[EUR][1000 genomes]
rs73187370	0.86[EUR][1000 genomes]
rs73415412	0.86[EUR][1000 genomes]
rs7786360	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv888939	chr7:106849393-107045700	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2756226	chr7:106850755-106944563	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv1016691	chr7:106880953-106960515	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1015615	chr7:106888529-106962332	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106846000-106925800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr7:106850800-106895200	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:106851000-106897600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr7:106851000-106946000	Weak transcription	Esophagus	oesophagus
5	chr7:106851200-106892400	Weak transcription	Gastric	stomach
6	chr7:106851200-106892600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:106853400-106925600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr7:106865600-106892400	Weak transcription	HepG2	liver
9	chr7:106866600-106909600	Weak transcription	Placenta	Placenta
10	chr7:106874000-106917800	Weak transcription	Osteobl	bone
11	chr7:106874000-106922600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:106874000-106929200	Weak transcription	NH-A	brain
13	chr7:106874000-106945600	Weak transcription	Pancreas	Pancrea
14	chr7:106875400-106908000	Weak transcription	HMEC	breast
15	chr7:106875600-106898400	Weak transcription	HUVEC	blood vessel
16	chr7:106878800-106895000	Weak transcription	K562	blood
17	chr7:106881200-106895600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr7:106883000-106918800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:106883400-106910200	Weak transcription	Lung	lung
20	chr7:106883400-106911400	Weak transcription	Right Ventricle	heart
21	chr7:106883600-106894200	Weak transcription	Fetal Heart	heart
22	chr7:106884800-106890800	Strong transcription	Primary T cells from cord blood	blood
23	chr7:106884800-106892600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr7:106885000-106897800	Weak transcription	Fetal Thymus	thymus
25	chr7:106885200-106890800	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr7:106885400-106897000	Weak transcription	NHEK	skin
27	chr7:106885600-106891000	Strong transcription	Primary B cells from peripheral blood	blood
28	chr7:106886400-106971400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr7:106886800-106946000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr7:106887000-106935800	Weak transcription	Small Intestine	intestine
31	chr7:106887400-106898200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr7:106887600-106890800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr7:106887600-106910200	Weak transcription	Adipose Nuclei	Adipose
34	chr7:106887600-106910400	Weak transcription	Psoas Muscle	Psoas
35	chr7:106887800-106891000	Strong transcription	Primary hematopoietic stem cells	blood
36	chr7:106887800-106903000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr7:106888400-106900600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr7:106888600-106891400	Weak transcription	Brain Substantia Nigra	brain
39	chr7:106888600-106894000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr7:106888600-106894000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr7:106888600-106899000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:106888600-106910000	Weak transcription	Duodenum Mucosa	Duodenum
43	chr7:106888600-106926600	Weak transcription	Ovary	ovary
44	chr7:106888600-106930800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr7:106888600-106931600	Weak transcription	Dnd41	blood
46	chr7:106888800-106894000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr7:106888800-106897600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr7:106888800-106910200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr7:106888800-106910200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr7:106888800-106910200	Weak transcription	Rectal Mucosa Donor 29	rectum

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