Variant report

Variant	rs73187347
Chromosome Location	chr7:106973631-106973632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10228388	0.81[EUR][1000 genomes]
rs10240677	0.93[EUR][1000 genomes]
rs10241552	0.89[EUR][1000 genomes]
rs10251350	0.89[EUR][1000 genomes]
rs10260092	0.89[EUR][1000 genomes]
rs10262523	0.82[EUR][1000 genomes]
rs10262727	0.81[EUR][1000 genomes]
rs17154063	1.00[EUR][1000 genomes]
rs2237664	0.83[EUR][1000 genomes]
rs34087251	0.93[EUR][1000 genomes]
rs59650342	0.95[EUR][1000 genomes]
rs60581555	0.91[EUR][1000 genomes]
rs67183972	1.00[EUR][1000 genomes]
rs67485259	0.89[EUR][1000 genomes]
rs67674952	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67693230	1.00[EUR][1000 genomes]
rs67752575	0.91[EUR][1000 genomes]
rs67754921	0.91[EUR][1000 genomes]
rs67869824	0.91[EUR][1000 genomes]
rs67921365	0.88[EUR][1000 genomes]
rs6977966	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73187335	0.86[EUR][1000 genomes]
rs73187346	1.00[EUR][1000 genomes]
rs73187349	1.00[EUR][1000 genomes]
rs73187350	0.93[EUR][1000 genomes]
rs73187352	1.00[EUR][1000 genomes]
rs73187359	1.00[EUR][1000 genomes]
rs73187360	1.00[EUR][1000 genomes]
rs73187362	1.00[EUR][1000 genomes]
rs73187364	1.00[EUR][1000 genomes]
rs73187367	0.95[EUR][1000 genomes]
rs73187370	0.95[EUR][1000 genomes]
rs73187377	0.83[EUR][1000 genomes]
rs7786360	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv888939	chr7:106849393-107045700	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv1825788	chr7:106897237-107136320	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1024793	chr7:106900877-107170312	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv608073	chr7:106960515-107063686	Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv1832266	chr7:106961882-107136320	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106888800-106999400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:106923800-106999400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:106946200-106999800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:106946400-106978400	Weak transcription	Fetal Intestine Large	intestine
5	chr7:106946400-106983600	Weak transcription	Aorta	Aorta
6	chr7:106946400-106983600	Weak transcription	Fetal Intestine Small	intestine
7	chr7:106946400-106999400	Weak transcription	Pancreas	Pancrea
8	chr7:106953800-106999400	Weak transcription	Left Ventricle	heart
9	chr7:106960000-106978200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr7:106960600-106974800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr7:106961200-106982400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr7:106963200-106974000	Weak transcription	K562	blood
13	chr7:106964200-106978400	Weak transcription	Liver	Liver
14	chr7:106964400-106977800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr7:106965400-106998000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr7:106967600-106978400	Weak transcription	Fetal Stomach	stomach
17	chr7:106967600-106983800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr7:106967800-106999800	Weak transcription	Fetal Heart	heart
19	chr7:106969200-106978200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:106969200-106984200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:106969800-106974200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr7:106973000-106973800	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr7:106973000-106974000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
24	chr7:106973000-106974000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr7:106973000-106974200	Enhancers	HUVEC	blood vessel
26	chr7:106973000-106974400	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr7:106973000-106974600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr7:106973200-106973800	Active TSS	GM12878-XiMat	blood
29	chr7:106973200-106974000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr7:106973200-106974600	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr7:106973400-106973800	Enhancers	Primary T cells from cord blood	blood
32	chr7:106973400-106973800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
33	chr7:106973400-106974000	Active TSS	Primary hematopoietic stem cells	blood
34	chr7:106973400-106974000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr7:106973400-106974000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr7:106973600-106973800	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr7:106973600-106973800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr7:106973600-106974000	Flanking Active TSS	Primary B cells from cord blood	blood
39	chr7:106973600-106974000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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