Variant report

Variant	rs17154063
Chromosome Location	chr7:107049050-107049051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107045595..107047319-chr7:107047624..107049995,2	MCF-7	breast:
2	chr7:107042878..107044924-chr7:107048140..107050111,2	MCF-7	breast:
3	chr7:107042056..107044075-chr7:107048262..107050371,2	K562	blood:
4	chr7:107047504..107049662-chr7:107051797..107053536,2	MCF-7	breast:
5	chr7:107046986..107049595-chr7:107052311..107054599,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10228388	0.81[EUR][1000 genomes]
rs10240677	0.93[EUR][1000 genomes]
rs10241552	0.89[EUR][1000 genomes]
rs10251350	0.89[EUR][1000 genomes]
rs10260092	0.89[EUR][1000 genomes]
rs10262523	0.82[EUR][1000 genomes]
rs10262727	0.81[EUR][1000 genomes]
rs2237664	0.83[EUR][1000 genomes]
rs34087251	0.93[EUR][1000 genomes]
rs59650342	0.95[EUR][1000 genomes]
rs60581555	0.91[EUR][1000 genomes]
rs66577901	0.91[EUR][1000 genomes]
rs67183972	1.00[EUR][1000 genomes]
rs67485259	0.89[EUR][1000 genomes]
rs67674952	1.00[EUR][1000 genomes]
rs67693230	1.00[EUR][1000 genomes]
rs67752575	0.91[EUR][1000 genomes]
rs67754921	0.91[EUR][1000 genomes]
rs67869824	0.91[EUR][1000 genomes]
rs67921365	0.88[EUR][1000 genomes]
rs6945787	0.82[EUR][1000 genomes]
rs6957510	0.86[EUR][1000 genomes]
rs6977966	1.00[EUR][1000 genomes]
rs73187335	0.86[EUR][1000 genomes]
rs73187346	1.00[EUR][1000 genomes]
rs73187347	1.00[EUR][1000 genomes]
rs73187349	1.00[EUR][1000 genomes]
rs73187350	0.93[EUR][1000 genomes]
rs73187352	1.00[EUR][1000 genomes]
rs73187359	1.00[EUR][1000 genomes]
rs73187360	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73187362	1.00[EUR][1000 genomes]
rs73187364	1.00[EUR][1000 genomes]
rs73187367	0.95[EUR][1000 genomes]
rs73187370	0.95[EUR][1000 genomes]
rs73187377	0.83[EUR][1000 genomes]
rs73189572	0.86[EUR][1000 genomes]
rs73189576	0.86[EUR][1000 genomes]
rs73189577	0.86[EUR][1000 genomes]
rs73419448	0.83[EUR][1000 genomes]
rs7777628	0.91[EUR][1000 genomes]
rs7786360	0.95[EUR][1000 genomes]
rs7802519	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	esv1825788	chr7:106897237-107136320	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1024793	chr7:106900877-107170312	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv608073	chr7:106960515-107063686	Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv1832266	chr7:106961882-107136320	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
7	nsv1019963	chr7:107033342-107188641	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv539052	chr7:107033342-107188641	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17154063	DUS4L	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107001400-107053600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:107003800-107050200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr7:107022200-107053000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:107027400-107053400	Weak transcription	Gastric	stomach
5	chr7:107027800-107050200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr7:107027800-107086800	Weak transcription	Aorta	Aorta
7	chr7:107028000-107052800	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:107028000-107054400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:107028200-107053000	Weak transcription	Fetal Stomach	stomach
10	chr7:107028200-107082400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr7:107028200-107103800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:107028800-107053000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:107028800-107053200	Weak transcription	K562	blood
14	chr7:107029400-107050400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr7:107031600-107069600	Weak transcription	Fetal Kidney	kidney
16	chr7:107031800-107050200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:107032000-107050200	Weak transcription	Fetal Intestine Large	intestine
18	chr7:107032400-107068000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr7:107033800-107069800	Weak transcription	Small Intestine	intestine
20	chr7:107034000-107055600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr7:107035800-107052800	Weak transcription	HSMMtube	muscle
22	chr7:107035800-107133000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr7:107036000-107050800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:107036200-107051000	Weak transcription	Liver	Liver
25	chr7:107036600-107050200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:107036800-107069800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr7:107037000-107053200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr7:107037000-107069800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr7:107037800-107102200	Weak transcription	Ovary	ovary
30	chr7:107038000-107054000	Weak transcription	Fetal Heart	heart
31	chr7:107038200-107069600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr7:107038800-107100600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr7:107039000-107050600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr7:107039000-107068000	Weak transcription	Lung	lung
35	chr7:107039200-107050600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr7:107040200-107050200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr7:107040200-107050200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr7:107040200-107051400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:107040200-107069800	Weak transcription	Fetal Intestine Small	intestine
40	chr7:107041000-107070000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr7:107041200-107053000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr7:107042400-107053800	Weak transcription	Colon Smooth Muscle	Colon
43	chr7:107044400-107065200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr7:107044800-107053200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr7:107045200-107053000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr7:107045400-107053000	Weak transcription	HUVEC	blood vessel
47	chr7:107045800-107051600	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr7:107046000-107051200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr7:107046000-107053800	Weak transcription	HepG2	liver
50	chr7:107046000-107054200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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