Variant report

Variant	rs67183972
Chromosome Location	chr7:106922379-106922380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:106808597..106811136-chr7:106920664..106923282,2	K562	blood:

Variant related genes	Relation type
ENSG00000105856	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10228388	0.81[EUR][1000 genomes]
rs10240677	0.93[EUR][1000 genomes]
rs10241552	0.89[EUR][1000 genomes]
rs10251350	0.89[EUR][1000 genomes]
rs10260092	0.89[EUR][1000 genomes]
rs10262523	0.82[EUR][1000 genomes]
rs10262727	0.81[EUR][1000 genomes]
rs17154063	1.00[EUR][1000 genomes]
rs2237664	0.83[EUR][1000 genomes]
rs34087251	0.93[EUR][1000 genomes]
rs59650342	0.95[EUR][1000 genomes]
rs60581555	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67485259	0.89[EUR][1000 genomes]
rs67674952	1.00[EUR][1000 genomes]
rs67693230	1.00[EUR][1000 genomes]
rs67752575	0.91[EUR][1000 genomes]
rs6952188	1.00[AMR][1000 genomes]
rs6977966	1.00[EUR][1000 genomes]
rs73187325	1.00[AMR][1000 genomes]
rs73187332	0.83[AMR][1000 genomes]
rs73187335	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73187346	1.00[EUR][1000 genomes]
rs73187347	1.00[EUR][1000 genomes]
rs73187349	1.00[EUR][1000 genomes]
rs73187350	0.93[EUR][1000 genomes]
rs73187352	1.00[EUR][1000 genomes]
rs73187359	1.00[EUR][1000 genomes]
rs73187360	1.00[EUR][1000 genomes]
rs73187362	1.00[EUR][1000 genomes]
rs73187364	1.00[EUR][1000 genomes]
rs73187367	0.95[EUR][1000 genomes]
rs73187370	0.95[EUR][1000 genomes]
rs73187377	0.83[EUR][1000 genomes]
rs73415412	1.00[AMR][1000 genomes]
rs7786360	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv888939	chr7:106849393-107045700	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2756226	chr7:106850755-106944563	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv1016691	chr7:106880953-106960515	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1015615	chr7:106888529-106962332	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1024903	chr7:106897237-106965091	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv1034707	chr7:106897237-106966215	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv1825788	chr7:106897237-107136320	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv1024793	chr7:106900877-107170312	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv1033064	chr7:106903099-106949640	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106846000-106925800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr7:106851000-106946000	Weak transcription	Esophagus	oesophagus
3	chr7:106853400-106925600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr7:106874000-106922600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr7:106874000-106929200	Weak transcription	NH-A	brain
6	chr7:106874000-106945600	Weak transcription	Pancreas	Pancrea
7	chr7:106886400-106971400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr7:106886800-106946000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:106887000-106935800	Weak transcription	Small Intestine	intestine
10	chr7:106888600-106926600	Weak transcription	Ovary	ovary
11	chr7:106888600-106930800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr7:106888600-106931600	Weak transcription	Dnd41	blood
13	chr7:106888800-106930800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:106888800-106932000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:106888800-106933400	Weak transcription	Fetal Stomach	stomach
16	chr7:106888800-106946000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:106888800-106946200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr7:106888800-106999400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr7:106889000-106933400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:106889000-106934400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr7:106889200-106922600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr7:106890800-106945600	Weak transcription	Aorta	Aorta
23	chr7:106891000-106923000	Weak transcription	Primary B cells from peripheral blood	blood
24	chr7:106891000-106931000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr7:106893400-106922800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:106898800-106927000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:106899200-106933600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:106903200-106922800	Weak transcription	Primary B cells from cord blood	blood
29	chr7:106903800-106924200	Weak transcription	Brain Hippocampus Middle	brain
30	chr7:106904800-106959800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr7:106905400-106922600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr7:106907000-106933600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr7:106908200-106933600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr7:106908600-106933000	Weak transcription	Liver	Liver
35	chr7:106909000-106932200	Weak transcription	NHEK	skin
36	chr7:106909000-106968600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr7:106910200-106946400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr7:106910600-106927400	Weak transcription	Adipose Nuclei	Adipose
39	chr7:106911000-106922600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:106911000-106926200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:106911000-106927600	Weak transcription	Psoas Muscle	Psoas
42	chr7:106911000-106930400	Weak transcription	Fetal Intestine Large	intestine
43	chr7:106911000-106932000	Weak transcription	K562	blood
44	chr7:106911000-106933600	Weak transcription	Lung	lung
45	chr7:106911000-106964200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr7:106911600-106923000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr7:106911800-106946000	Weak transcription	Fetal Intestine Small	intestine
48	chr7:106912400-106934200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr7:106915200-106953400	Weak transcription	Left Ventricle	heart
50	chr7:106915400-106922600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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