Variant report

Variant	rs34087251
Chromosome Location	chr7:107002504-107002505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10240677	0.87[EUR][1000 genomes]
rs10241552	0.83[EUR][1000 genomes]
rs10251350	0.83[EUR][1000 genomes]
rs10260092	0.83[EUR][1000 genomes]
rs17154063	0.93[EUR][1000 genomes]
rs59650342	0.89[EUR][1000 genomes]
rs60581555	0.84[EUR][1000 genomes]
rs66577901	0.84[EUR][1000 genomes]
rs67183972	0.93[EUR][1000 genomes]
rs67485259	0.83[EUR][1000 genomes]
rs67674952	0.93[EUR][1000 genomes]
rs67693230	0.93[EUR][1000 genomes]
rs67752575	0.84[EUR][1000 genomes]
rs67754921	0.84[EUR][1000 genomes]
rs67869824	0.84[EUR][1000 genomes]
rs67921365	0.82[EUR][1000 genomes]
rs6977966	0.93[EUR][1000 genomes]
rs73187346	0.93[EUR][1000 genomes]
rs73187347	0.93[EUR][1000 genomes]
rs73187349	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73187350	0.87[EUR][1000 genomes]
rs73187352	0.93[EUR][1000 genomes]
rs73187359	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73187360	0.93[EUR][1000 genomes]
rs73187362	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73187364	0.93[EUR][1000 genomes]
rs73187367	0.89[EUR][1000 genomes]
rs73187370	0.89[EUR][1000 genomes]
rs7777628	0.84[EUR][1000 genomes]
rs7786360	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv888939	chr7:106849393-107045700	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv1825788	chr7:106897237-107136320	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1024793	chr7:106900877-107170312	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv608073	chr7:106960515-107063686	Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv1832266	chr7:106961882-107136320	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34087251	DUS4L	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106984400-107006200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:106986000-107013200	Weak transcription	Small Intestine	intestine
3	chr7:106989200-107018800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr7:106996400-107003000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:106998200-107003200	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr7:106998400-107004200	Weak transcription	A549	lung
7	chr7:106998600-107003800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr7:106998800-107003200	Strong transcription	Adipose Nuclei	Adipose
9	chr7:106998800-107003800	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr7:106999000-107005000	Weak transcription	HUVEC	blood vessel
11	chr7:106999600-107002800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr7:106999600-107003200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:106999600-107003800	ZNF genes & repeats	Dnd41	blood
14	chr7:106999600-107005200	Strong transcription	Primary T cells from cord blood	blood
15	chr7:106999600-107007600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr7:106999800-107002800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:106999800-107002800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:106999800-107002800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:106999800-107002800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
20	chr7:106999800-107002800	Strong transcription	Skeletal Muscle Female	skeletal muscle
21	chr7:107000000-107003200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr7:107000000-107004400	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr7:107000200-107002800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:107000200-107002800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
25	chr7:107000200-107003200	Strong transcription	HepG2	liver
26	chr7:107000400-107002800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr7:107000400-107003600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr7:107000600-107004200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr7:107000800-107002600	Strong transcription	Fetal Kidney	kidney
30	chr7:107000800-107003400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:107000800-107003400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr7:107001000-107012200	Weak transcription	NHDF-Ad	bronchial
33	chr7:107001200-107002800	Strong transcription	Brain Hippocampus Middle	brain
34	chr7:107001200-107002800	Strong transcription	Skeletal Muscle Male	skeletal muscle
35	chr7:107001200-107003200	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr7:107001200-107003200	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr7:107001200-107003400	Strong transcription	Fetal Lung	lung
38	chr7:107001200-107004600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr7:107001200-107012400	Weak transcription	Fetal Heart	heart
40	chr7:107001200-107013600	Weak transcription	Colon Smooth Muscle	Colon
41	chr7:107001400-107002600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr7:107001400-107002800	Strong transcription	HUES6 Cell Line	embryonic stem cell
43	chr7:107001400-107002800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr7:107001400-107002800	Strong transcription	Duodenum Mucosa	Duodenum
45	chr7:107001400-107002800	Weak transcription	HSMMtube	muscle
46	chr7:107001400-107003000	Strong transcription	Primary hematopoietic stem cells	blood
47	chr7:107001400-107003200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr7:107001400-107003200	Strong transcription	Liver	Liver
49	chr7:107001400-107003200	Strong transcription	Fetal Intestine Large	intestine
50	chr7:107001400-107003400	Strong transcription	Primary B cells from peripheral blood	blood

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