Variant report

Variant	rs66577901
Chromosome Location	chr7:107185583-107185584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107178929..107181687-chr7:107183616..107186437,2	K562	blood:
2	chr7:107183753..107186619-chr7:107203811..107206645,3	K562	blood:

Variant related genes	Relation type
ENSG00000105865	Chromatin interaction
ENSG00000164597	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10240677	0.84[EUR][1000 genomes]
rs10251350	0.81[EUR][1000 genomes]
rs10260092	0.81[EUR][1000 genomes]
rs17154063	0.91[EUR][1000 genomes]
rs34087251	0.84[EUR][1000 genomes]
rs59491009	0.86[EUR][1000 genomes]
rs59650342	0.95[EUR][1000 genomes]
rs67485259	0.81[EUR][1000 genomes]
rs67754921	1.00[EUR][1000 genomes]
rs67869824	1.00[EUR][1000 genomes]
rs67921365	0.98[EUR][1000 genomes]
rs6945787	0.91[EUR][1000 genomes]
rs6957510	0.95[EUR][1000 genomes]
rs73187349	0.91[EUR][1000 genomes]
rs73187350	0.84[EUR][1000 genomes]
rs73187352	0.91[EUR][1000 genomes]
rs73187359	0.91[EUR][1000 genomes]
rs73187360	0.91[EUR][1000 genomes]
rs73187362	0.91[EUR][1000 genomes]
rs73187364	0.91[EUR][1000 genomes]
rs73187367	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73187370	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73187377	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73189572	0.95[EUR][1000 genomes]
rs73189576	0.95[EUR][1000 genomes]
rs73189577	0.95[EUR][1000 genomes]
rs73189582	0.81[EUR][1000 genomes]
rs73419448	0.93[EUR][1000 genomes]
rs7777628	1.00[EUR][1000 genomes]
rs7786360	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7802519	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1019963	chr7:107033342-107188641	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv539052	chr7:107033342-107188641	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1028571	chr7:107114479-107299723	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv539053	chr7:107114479-107299723	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv482365	chr7:107122401-107271861	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv608074	chr7:107179131-107260856	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107154000-107193800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:107156400-107195000	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:107162200-107203400	Weak transcription	Fetal Kidney	kidney
4	chr7:107164200-107185800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:107166600-107194600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:107169600-107186400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr7:107170200-107203600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:107172800-107200200	Weak transcription	Psoas Muscle	Psoas
9	chr7:107175600-107185800	Weak transcription	Small Intestine	intestine
10	chr7:107176800-107187400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr7:107177200-107185800	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr7:107178600-107194200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:107178800-107194400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:107179400-107203200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr7:107182800-107186200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:107182800-107186600	Strong transcription	Stomach Smooth Muscle	stomach
17	chr7:107182800-107188400	Strong transcription	Duodenum Mucosa	Duodenum
18	chr7:107183000-107186200	ZNF genes & repeats	Fetal Stomach	stomach
19	chr7:107183000-107186400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
20	chr7:107183000-107187400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr7:107183000-107188600	Strong transcription	Hela-S3	cervix
22	chr7:107183200-107188400	Strong transcription	Dnd41	blood
23	chr7:107183200-107198800	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr7:107183400-107185600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr7:107183600-107186600	ZNF genes & repeats	Fetal Intestine Large	intestine
26	chr7:107183600-107188000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:107183600-107188200	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr7:107183600-107188200	Strong transcription	HUVEC	blood vessel
29	chr7:107183600-107189000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr7:107183800-107185800	Strong transcription	Primary T cells from cord blood	blood
31	chr7:107183800-107185800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr7:107183800-107186600	Strong transcription	NHEK	skin
33	chr7:107183800-107187000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr7:107183800-107188600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr7:107184000-107186400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr7:107184000-107187200	ZNF genes & repeats	Fetal Intestine Small	intestine
37	chr7:107184000-107187800	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr7:107184200-107186200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr7:107184200-107188400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr7:107184400-107185800	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr7:107184400-107186000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
42	chr7:107184400-107186000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr7:107184400-107186000	ZNF genes & repeats	Brain Germinal Matrix	brain
44	chr7:107184400-107186200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr7:107184400-107186600	ZNF genes & repeats	GM12878-XiMat	blood
46	chr7:107184400-107187800	Strong transcription	Colonic Mucosa	Colon
47	chr7:107184400-107188200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
48	chr7:107184400-107188200	Strong transcription	Placenta	Placenta
49	chr7:107184400-107188200	Strong transcription	NHDF-Ad	bronchial
50	chr7:107184400-107189000	Strong transcription	Fetal Thymus	thymus

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