Variant report

Variant	rs67869824
Chromosome Location	chr7:107172220-107172221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107169999..107172942-chr7:107175025..107176543,2	K562	blood:
2	chr7:107165516..107168282-chr7:107172051..107174509,2	MCF-7	breast:
3	chr7:107166936..107168955-chr7:107170505..107173136,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10240677	0.84[EUR][1000 genomes]
rs10251350	0.81[EUR][1000 genomes]
rs10260092	0.81[EUR][1000 genomes]
rs17154063	0.91[EUR][1000 genomes]
rs34087251	0.84[EUR][1000 genomes]
rs59491009	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs59542667	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59650342	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59650878	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs66577901	1.00[EUR][1000 genomes]
rs67485259	0.81[EUR][1000 genomes]
rs67674952	0.91[EUR][1000 genomes]
rs67754921	1.00[EUR][1000 genomes]
rs67921365	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6945787	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6957510	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs73187347	0.91[EUR][1000 genomes]
rs73187349	0.91[EUR][1000 genomes]
rs73187350	0.84[EUR][1000 genomes]
rs73187352	0.91[EUR][1000 genomes]
rs73187359	0.91[EUR][1000 genomes]
rs73187360	0.91[EUR][1000 genomes]
rs73187362	0.91[EUR][1000 genomes]
rs73187364	0.91[EUR][1000 genomes]
rs73187367	0.95[EUR][1000 genomes]
rs73187370	0.95[EUR][1000 genomes]
rs73187377	0.83[EUR][1000 genomes]
rs73189572	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs73189576	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs73189577	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs73189582	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs73189583	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73189586	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73189592	0.87[AMR][1000 genomes]
rs73191605	0.87[AMR][1000 genomes]
rs73419448	0.93[EUR][1000 genomes]
rs7777628	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7786360	0.95[EUR][1000 genomes]
rs7802519	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1019963	chr7:107033342-107188641	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv539052	chr7:107033342-107188641	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1028571	chr7:107114479-107299723	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv539053	chr7:107114479-107299723	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv482365	chr7:107122401-107271861	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107126800-107184800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr7:107127400-107175400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr7:107131400-107179800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:107131800-107175000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr7:107144800-107185000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:107146000-107185000	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:107146400-107183800	Weak transcription	Ovary	ovary
8	chr7:107146400-107183800	Weak transcription	Thymus	Thymus
9	chr7:107146400-107184000	Weak transcription	Aorta	Aorta
10	chr7:107147000-107178200	Weak transcription	Liver	Liver
11	chr7:107147600-107178400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr7:107147600-107183600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr7:107149400-107183800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:107149600-107178800	Weak transcription	Fetal Stomach	stomach
15	chr7:107153800-107183800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr7:107154000-107193800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:107156000-107178400	Weak transcription	Fetal Intestine Large	intestine
18	chr7:107156400-107195000	Weak transcription	Colon Smooth Muscle	Colon
19	chr7:107158000-107183800	Weak transcription	Esophagus	oesophagus
20	chr7:107159400-107172400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr7:107161000-107185000	Weak transcription	HSMMtube	muscle
22	chr7:107162000-107178600	Weak transcription	Lung	lung
23	chr7:107162000-107184000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr7:107162200-107203400	Weak transcription	Fetal Kidney	kidney
25	chr7:107162600-107177400	Weak transcription	Fetal Muscle Leg	muscle
26	chr7:107162800-107177800	Weak transcription	Primary B cells from cord blood	blood
27	chr7:107163000-107184400	Weak transcription	Colonic Mucosa	Colon
28	chr7:107163200-107184600	Weak transcription	NHLF	lung
29	chr7:107163400-107178400	Weak transcription	Fetal Muscle Trunk	muscle
30	chr7:107163400-107184200	Weak transcription	Fetal Thymus	thymus
31	chr7:107163600-107184800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr7:107164200-107185800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr7:107164600-107182800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr7:107164800-107185000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr7:107166600-107194600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr7:107166800-107172400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr7:107167000-107184400	Weak transcription	Placenta	Placenta
38	chr7:107167200-107175200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr7:107167200-107178400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr7:107167200-107178400	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr7:107167400-107174600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:107167400-107175200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr7:107167400-107177000	Weak transcription	Primary B cells from peripheral blood	blood
44	chr7:107167400-107177400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr7:107167400-107177800	Weak transcription	Dnd41	blood
46	chr7:107167400-107178200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr7:107167400-107179800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr7:107167400-107182600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr7:107167400-107183600	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr7:107167400-107183800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links