Variant report

Variant	rs73189592
Chromosome Location	chr7:107270564-107270565
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107270555..107273086-chr7:107273595..107276120,2	K562	blood:
2	chr7:107270080..107271821-chr7:107314017..107316491,2	MCF-7	breast:
3	chr7:107270259..107272802-chr7:107273595..107276424,3	K562	blood:
4	chr7:107265867..107267996-chr7:107270274..107272239,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BCAP29-2	chr7:107270458-107271165	NONHSAT122694

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs59491009	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59542667	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59650342	0.87[AMR][1000 genomes]
rs59650878	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67869824	0.87[AMR][1000 genomes]
rs67921365	0.87[AMR][1000 genomes]
rs6945787	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6957510	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73189572	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73189576	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73189577	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73189582	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73189583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73189586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73189594	0.97[EUR][1000 genomes]
rs73189601	0.97[EUR][1000 genomes]
rs73189602	0.97[EUR][1000 genomes]
rs73191603	0.97[EUR][1000 genomes]
rs73191605	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73191606	0.97[EUR][1000 genomes]
rs73191607	0.97[EUR][1000 genomes]
rs73191610	0.97[EUR][1000 genomes]
rs73191611	0.95[EUR][1000 genomes]
rs7777628	0.87[AMR][1000 genomes]
rs7789746	0.97[EUR][1000 genomes]
rs7790596	0.95[EUR][1000 genomes]
rs7790876	0.97[EUR][1000 genomes]
rs7791196	0.97[EUR][1000 genomes]
rs7802519	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1028571	chr7:107114479-107299723	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv539053	chr7:107114479-107299723	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv482365	chr7:107122401-107271861	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107221200-107272000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:107221400-107272400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:107221400-107276000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:107235200-107271800	Weak transcription	Small Intestine	intestine
5	chr7:107236000-107270800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:107238000-107272000	Weak transcription	Esophagus	oesophagus
7	chr7:107255400-107271600	Weak transcription	Pancreas	Pancrea
8	chr7:107255600-107271600	Weak transcription	Brain Substantia Nigra	brain
9	chr7:107255600-107272000	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:107256400-107272800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr7:107256800-107271600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr7:107256800-107278600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr7:107257800-107270600	Weak transcription	Brain Anterior Caudate	brain
14	chr7:107257800-107271000	Weak transcription	A549	lung
15	chr7:107258200-107271800	Weak transcription	Fetal Brain Male	brain
16	chr7:107258800-107272800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:107261600-107272000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr7:107261600-107273800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr7:107262200-107272200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr7:107262400-107271000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:107262400-107271200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr7:107263000-107273800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr7:107263200-107271200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr7:107263400-107272200	Weak transcription	Fetal Heart	heart
25	chr7:107263400-107272800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr7:107263600-107271800	Weak transcription	Fetal Muscle Leg	muscle
27	chr7:107263600-107272800	Weak transcription	HUVEC	blood vessel
28	chr7:107263600-107276600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr7:107263800-107271800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr7:107263800-107271800	Weak transcription	K562	blood
31	chr7:107263800-107272000	Weak transcription	HMEC	breast
32	chr7:107263800-107273000	Weak transcription	Dnd41	blood
33	chr7:107263800-107278800	Weak transcription	Primary T cells from cord blood	blood
34	chr7:107264200-107271200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr7:107264200-107271200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr7:107264200-107278400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr7:107264800-107271400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr7:107268600-107270600	Enhancers	Primary B cells from peripheral blood	blood
39	chr7:107268800-107271000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr7:107269200-107272400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr7:107269200-107272400	Weak transcription	Gastric	stomach
42	chr7:107269400-107271000	Strong transcription	Fetal Stomach	stomach
43	chr7:107269600-107272000	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr7:107269800-107270600	Strong transcription	NHEK	skin
45	chr7:107269800-107272200	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr7:107269800-107275400	Weak transcription	Left Ventricle	heart
47	chr7:107270000-107272000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr7:107270000-107272000	Weak transcription	Fetal Intestine Small	intestine
49	chr7:107270000-107272600	Weak transcription	Ovary	ovary
50	chr7:107270000-107272800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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