Variant report
| Variant | rs7789746 |
|---|---|
| Chromosome Location | chr7:107297366-107297367 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-COG5-1 | chr7:107297075-107300651 | ENSG00000233705 |
| 2 | lnc-COG5-1 | chr7:107296961-107300651 | NONHSAT122700 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| SLC26A4 | TF binding region |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs59491009 | 0.90[EUR][1000 genomes] |
| rs59542667 | 0.97[EUR][1000 genomes] |
| rs59650878 | 0.97[EUR][1000 genomes] |
| rs6945787 | 0.86[EUR][1000 genomes] |
| rs6957510 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs73189572 | 0.81[EUR][1000 genomes] |
| rs73189576 | 0.81[EUR][1000 genomes] |
| rs73189577 | 0.81[EUR][1000 genomes] |
| rs73189582 | 0.95[EUR][1000 genomes] |
| rs73189583 | 0.97[EUR][1000 genomes] |
| rs73189586 | 0.97[EUR][1000 genomes] |
| rs73189592 | 0.97[EUR][1000 genomes] |
| rs73189594 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73189601 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73189602 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73191603 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73191605 | 1.00[EUR][1000 genomes] |
| rs73191606 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73191607 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73191610 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73191611 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7790596 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7790876 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7791196 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7802519 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033979 | chr7:107003734-107877761 | Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 62 gene(s) | inside rSNPs | diseases |
| 2 | nsv1028571 | chr7:107114479-107299723 | Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 3 | nsv539053 | chr7:107114479-107299723 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:107296200-107299400 | Weak transcription | Dnd41 | blood |
