Variant report

Variant	rs73189586
Chromosome Location	chr7:107260178-107260179
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107258452..107261266-chr7:107264575..107266794,3	K562	blood:
2	chr7:107259157..107261520-chr7:107262490..107264922,2	MCF-7	breast:
3	chr7:107202864..107204731-chr7:107260001..107262744,2	K562	blood:

Variant related genes	Relation type
ENSG00000105865	Chromatin interaction
ENSG00000164597	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs59491009	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59542667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59650342	0.87[AMR][1000 genomes]
rs59650878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67869824	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs67921365	0.87[AMR][1000 genomes]
rs6945787	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6957510	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73189572	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73189576	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73189577	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73189582	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73189583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73189592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73189594	0.97[EUR][1000 genomes]
rs73189601	0.97[EUR][1000 genomes]
rs73189602	0.97[EUR][1000 genomes]
rs73191603	0.97[EUR][1000 genomes]
rs73191605	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73191606	0.97[EUR][1000 genomes]
rs73191607	0.97[EUR][1000 genomes]
rs73191610	0.97[EUR][1000 genomes]
rs73191611	0.95[EUR][1000 genomes]
rs7777628	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7789746	0.97[EUR][1000 genomes]
rs7790596	0.95[EUR][1000 genomes]
rs7790876	0.97[EUR][1000 genomes]
rs7791196	0.97[EUR][1000 genomes]
rs7802519	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1028571	chr7:107114479-107299723	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv539053	chr7:107114479-107299723	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv482365	chr7:107122401-107271861	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv608074	chr7:107179131-107260856	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107221200-107272000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:107221400-107272400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:107221400-107276000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:107227800-107265400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:107235200-107271800	Weak transcription	Small Intestine	intestine
6	chr7:107235800-107268200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:107236000-107262800	Weak transcription	GM12878-XiMat	blood
8	chr7:107236000-107270800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:107238000-107272000	Weak transcription	Esophagus	oesophagus
10	chr7:107242400-107260200	Weak transcription	Colonic Mucosa	Colon
11	chr7:107246200-107261200	Weak transcription	Right Ventricle	heart
12	chr7:107251400-107261400	Strong transcription	HUVEC	blood vessel
13	chr7:107251600-107261600	Weak transcription	Fetal Heart	heart
14	chr7:107253200-107262200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr7:107254600-107264400	Weak transcription	HSMMtube	muscle
16	chr7:107254800-107262600	Weak transcription	Gastric	stomach
17	chr7:107255200-107260200	Weak transcription	HepG2	liver
18	chr7:107255200-107265000	Weak transcription	Hela-S3	cervix
19	chr7:107255400-107261400	Weak transcription	NHLF	lung
20	chr7:107255400-107262000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr7:107255400-107271600	Weak transcription	Pancreas	Pancrea
22	chr7:107255600-107261000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr7:107255600-107261400	Weak transcription	K562	blood
24	chr7:107255600-107261400	Strong transcription	Osteobl	bone
25	chr7:107255600-107262200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr7:107255600-107271600	Weak transcription	Brain Substantia Nigra	brain
27	chr7:107255600-107272000	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:107255800-107261200	Weak transcription	Aorta	Aorta
29	chr7:107255800-107261400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr7:107255800-107262000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr7:107255800-107263400	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr7:107255800-107264800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr7:107255800-107266200	Weak transcription	Psoas Muscle	Psoas
34	chr7:107255800-107267400	Weak transcription	Fetal Thymus	thymus
35	chr7:107256200-107269600	Weak transcription	Brain Angular Gyrus	brain
36	chr7:107256400-107272800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr7:107256600-107261400	Weak transcription	Fetal Brain Female	brain
38	chr7:107256600-107264200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr7:107256800-107260600	Weak transcription	Primary T cells from cord blood	blood
40	chr7:107256800-107262200	Strong transcription	HSMM	muscle
41	chr7:107256800-107263200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr7:107256800-107268800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr7:107256800-107269000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr7:107256800-107271600	Weak transcription	Rectal Smooth Muscle	rectum
45	chr7:107256800-107278600	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr7:107257000-107261400	Weak transcription	Lung	lung
47	chr7:107257000-107262400	Weak transcription	NHDF-Ad	bronchial
48	chr7:107257000-107262600	Weak transcription	NH-A	brain
49	chr7:107257000-107262800	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr7:107257000-107269200	Weak transcription	Brain Germinal Matrix	brain

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