Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr7:107301735-107303209	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107302999..107305030-chr7:107306145..107307910,2	K562	blood:

Variant related genes	Relation type
SLC26A4-AS1	TF binding region

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs59491009	0.90[EUR][1000 genomes]
rs59542667	0.97[EUR][1000 genomes]
rs59650878	0.97[EUR][1000 genomes]
rs6945787	0.86[EUR][1000 genomes]
rs6957510	0.81[EUR][1000 genomes]
rs73189572	0.81[EUR][1000 genomes]
rs73189576	0.81[EUR][1000 genomes]
rs73189577	0.81[EUR][1000 genomes]
rs73189582	0.95[EUR][1000 genomes]
rs73189583	0.97[EUR][1000 genomes]
rs73189586	0.97[EUR][1000 genomes]
rs73189592	0.97[EUR][1000 genomes]
rs73189594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73189601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73189602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73191603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73191605	1.00[EUR][1000 genomes]
rs73191606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73191607	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73191611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7789746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7790596	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7790876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7791196	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7802519	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107302600-107303200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:107302800-107303800	Weak transcription	Spleen	Spleen

Quick Search: