Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107297566..107299940-chr7:107300872..107303312,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COG5-1	chr7:107297075-107300651	ENSG00000233705
2	lnc-COG5-1	chr7:107296961-107300651	NONHSAT122700
3	lnc-COG5-1	chr7:107297570-107298114	NONHSAT122701

Variant related genes	Relation type
ENSG00000233705	Chromatin interaction
ENSG00000091137	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs59491009	0.90[EUR][1000 genomes]
rs59542667	0.97[EUR][1000 genomes]
rs59650878	0.97[EUR][1000 genomes]
rs6945787	0.86[EUR][1000 genomes]
rs6957510	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs73189572	0.81[EUR][1000 genomes]
rs73189576	0.81[EUR][1000 genomes]
rs73189577	0.81[EUR][1000 genomes]
rs73189582	0.95[EUR][1000 genomes]
rs73189583	0.97[EUR][1000 genomes]
rs73189586	0.97[EUR][1000 genomes]
rs73189592	0.97[EUR][1000 genomes]
rs73189594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73189601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73189602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73191603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73191605	1.00[EUR][1000 genomes]
rs73191606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73191607	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73191610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73191611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7789746	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7790596	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7791196	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7802519	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1028571	chr7:107114479-107299723	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv539053	chr7:107114479-107299723	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107296200-107299400	Weak transcription	Dnd41	blood

Quick Search: