Variant report

Variant	rs2310405
Chromosome Location	chr3:94935804-94935805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:94934431..94935951-chr3:94936179..94938719,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10049455	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1039646	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11919076	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1516589	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2310407	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4407407	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56767894	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60964852	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6437772	0.92[EUR][1000 genomes]
rs6779933	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6806336	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6810127	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73172320	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73178731	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7642437	0.94[EUR][1000 genomes]
rs9288884	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9812370	0.81[AMR][1000 genomes]
rs9820362	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9821870	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9822495	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9824723	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9833144	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9836994	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9839723	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9844705	0.88[EUR][1000 genomes]
rs9847492	0.94[EUR][1000 genomes]
rs9849073	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9851012	0.81[AMR][1000 genomes]
rs9851182	0.92[EUR][1000 genomes]
rs9852208	0.94[EUR][1000 genomes]
rs9853750	0.92[EUR][1000 genomes]
rs9857233	0.94[EUR][1000 genomes]
rs9858454	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9860912	0.90[EUR][1000 genomes]
rs9861489	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9865409	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9867698	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9880378	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013680	chr3:94777881-95538336	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536653	chr3:94777881-95538336	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv877170	chr3:94790666-95564838	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877172	chr3:94807394-94943493	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv999347	chr3:94832290-95177750	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv877174	chr3:94867122-94983900	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	esv2754985	chr3:94868320-94970627	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
8	nsv877175	chr3:94869561-95210873	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1011235	chr3:94870789-95238299	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	esv2752668	chr3:94887527-94967365	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
11	esv2755718	chr3:94887527-94970627	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
12	esv2754322	chr3:94913312-94967365	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94931800-94936200	Weak transcription	Liver	Liver

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