Variant report
Variant | rs9833144 |
---|---|
Chromosome Location | chr3:94946250-94946251 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10049455 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs1039646 | 0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs11917907 | 0.85[AMR][1000 genomes] |
rs11919076 | 0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs11920766 | 0.85[AMR][1000 genomes] |
rs13319557 | 0.85[AMR][1000 genomes] |
rs1516589 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs2310405 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2310407 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4407407 | 0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs56767894 | 0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs60964852 | 0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs6437772 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs6776345 | 0.81[AMR][1000 genomes] |
rs6779933 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6806336 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs6810127 | 0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs73172320 | 0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs73178731 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs73178779 | 0.82[AMR][1000 genomes] |
rs7642437 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9288884 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9812370 | 0.88[AMR][1000 genomes] |
rs9820362 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9821870 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs9822495 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9824723 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9826705 | 0.85[AMR][1000 genomes] |
rs9834958 | 0.85[AMR][1000 genomes] |
rs9836994 | 0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9837809 | 0.85[AMR][1000 genomes] |
rs9839723 | 0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs9844570 | 0.85[AMR][1000 genomes] |
rs9844705 | 0.88[EUR][1000 genomes] |
rs9847492 | 0.94[EUR][1000 genomes] |
rs9849073 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9851012 | 0.88[AMR][1000 genomes] |
rs9851182 | 0.92[EUR][1000 genomes] |
rs9852208 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9853750 | 0.92[EUR][1000 genomes] |
rs9857233 | 0.94[EUR][1000 genomes] |
rs9858454 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9859370 | 0.85[AMR][1000 genomes] |
rs9860912 | 0.90[EUR][1000 genomes] |
rs9861489 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9865409 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs9867698 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs9880378 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1013680 | chr3:94777881-95538336 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv536653 | chr3:94777881-95538336 | Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
3 | nsv877170 | chr3:94790666-95564838 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
4 | nsv999347 | chr3:94832290-95177750 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
5 | nsv877174 | chr3:94867122-94983900 | Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
6 | esv2754985 | chr3:94868320-94970627 | Enhancers Active TSS Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
7 | nsv877175 | chr3:94869561-95210873 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
8 | nsv1011235 | chr3:94870789-95238299 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
9 | esv2752668 | chr3:94887527-94967365 | Enhancers ZNF genes & repeats Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
10 | esv2755718 | chr3:94887527-94970627 | Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
11 | esv2754322 | chr3:94913312-94967365 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
12 | nsv428091 | chr3:94942642-95393754 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:94945600-94946600 | Enhancers | Liver | Liver |