Variant report

Variant	rs9880378
Chromosome Location	chr3:94990781-94990782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10049455	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1039646	0.84[EUR][1000 genomes]
rs11917907	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11919076	0.84[EUR][1000 genomes]
rs11920766	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13319557	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1400295	0.84[EUR][1000 genomes]
rs1476324	0.82[EUR][1000 genomes]
rs1516589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1968015	0.82[EUR][1000 genomes]
rs2310405	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2310407	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4407407	0.84[EUR][1000 genomes]
rs477121	0.84[EUR][1000 genomes]
rs56767894	0.94[EUR][1000 genomes]
rs60964852	0.84[EUR][1000 genomes]
rs6437772	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6776345	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6779933	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6806336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6810127	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73172320	0.84[EUR][1000 genomes]
rs73178731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73178779	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7642437	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7648942	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9288884	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs938532	0.82[EUR][1000 genomes]
rs9812370	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9820362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9821870	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9822495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9824723	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9826705	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9833144	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9834958	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9836994	0.84[EUR][1000 genomes]
rs9837809	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9839723	0.84[EUR][1000 genomes]
rs9844570	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9844705	0.94[EUR][1000 genomes]
rs9847492	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9849073	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9851012	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9851182	0.98[EUR][1000 genomes]
rs9852208	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9853750	0.98[EUR][1000 genomes]
rs9854054	0.84[EUR][1000 genomes]
rs9857233	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9858454	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9859370	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9860912	0.96[EUR][1000 genomes]
rs9861489	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9865304	0.84[EUR][1000 genomes]
rs9865409	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9867698	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013680	chr3:94777881-95538336	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536653	chr3:94777881-95538336	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv877170	chr3:94790666-95564838	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv999347	chr3:94832290-95177750	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv877175	chr3:94869561-95210873	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1011235	chr3:94870789-95238299	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv428091	chr3:94942642-95393754	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv428744	chr3:94960533-95145238	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv834767	chr3:94972069-95148035	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1002952	chr3:94972310-95025749	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv536654	chr3:94972310-95025749	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94988800-94995800	Weak transcription	Fetal Brain Male	brain
2	chr3:94990600-94996000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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