Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10806154	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11758432	0.85[EUR][1000 genomes]
rs12192086	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1338023	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2275291	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3818839	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3929867	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7750836	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9341753	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9343849	0.81[ASN][1000 genomes]
rs9343853	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9343859	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9343865	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9343867	0.81[EUR][1000 genomes]
rs9343869	0.81[EUR][1000 genomes]
rs9350797	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9350801	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9352685	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9352688	0.82[EUR][1000 genomes]
rs9359361	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9361478	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9361483	0.86[EUR][1000 genomes]
rs9443623	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9448594	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9448616	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9688928	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79626000-79644000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:79639600-79650400	Weak transcription	HSMMtube	muscle
3	chr6:79640400-79655000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:79640600-79648800	Weak transcription	Fetal Kidney	kidney
5	chr6:79640800-79643000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:79641400-79647000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:79641600-79650200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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