Variant report

Variant	rs12192086
Chromosome Location	chr6:79600510-79600511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10806154	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11758432	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11964204	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12176511	0.84[ASN][1000 genomes]
rs1338023	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2275290	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2275291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2321897	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36017295	0.82[EUR][1000 genomes]
rs3805746	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3818839	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3929867	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6908105	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7740307	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7750836	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7756648	0.94[ASN][1000 genomes]
rs7776138	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs9341753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9343849	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9343853	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9343859	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9343865	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9343867	0.90[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9343869	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9350797	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9350801	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9352668	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9352672	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9352685	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9352688	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9352693	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.93[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9359361	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9361459	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9361473	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9361478	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9361481	0.88[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs9361483	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9443623	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443642	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9448581	0.83[ASN][1000 genomes]
rs9448594	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9448600	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9448601	0.84[ASN][1000 genomes]
rs9448602	0.83[ASN][1000 genomes]
rs9448616	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9688928	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1839807	chr6:79532610-79606615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79578200-79608600	Weak transcription	Adipose Nuclei	Adipose
2	chr6:79578200-79608600	Weak transcription	Left Ventricle	heart
3	chr6:79578200-79613600	Weak transcription	HSMM	muscle
4	chr6:79578400-79613800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:79578400-79619800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:79578400-79620000	Weak transcription	Right Ventricle	heart
7	chr6:79578600-79604800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:79578600-79612400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:79578600-79618200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:79578800-79602800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:79578800-79608600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:79578800-79613800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:79582000-79608400	Weak transcription	Fetal Intestine Large	intestine
14	chr6:79584800-79608600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:79585200-79619600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:79585200-79620200	Weak transcription	Fetal Lung	lung
17	chr6:79587600-79607600	Weak transcription	Dnd41	blood
18	chr6:79587600-79611200	Weak transcription	Brain Anterior Caudate	brain
19	chr6:79587800-79608400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:79588000-79619800	Weak transcription	Fetal Brain Female	brain
21	chr6:79588200-79602000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:79588200-79611800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:79588200-79611800	Weak transcription	Pancreas	Pancrea
24	chr6:79588200-79612000	Weak transcription	Fetal Stomach	stomach
25	chr6:79588200-79616400	Weak transcription	Primary T cells from cord blood	blood
26	chr6:79589600-79600800	Weak transcription	Lung	lung
27	chr6:79589600-79618200	Weak transcription	Aorta	Aorta
28	chr6:79589600-79619800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:79589800-79620200	Weak transcription	Fetal Brain Male	brain
30	chr6:79592600-79620200	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr6:79596200-79608600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr6:79596800-79618600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:79597000-79620000	Weak transcription	Fetal Kidney	kidney
34	chr6:79597400-79619800	Weak transcription	Ovary	ovary
35	chr6:79598000-79603000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:79598000-79604000	Weak transcription	Fetal Heart	heart
37	chr6:79598400-79608600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr6:79598800-79612000	Weak transcription	Fetal Intestine Small	intestine
39	chr6:79599400-79607600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:79599400-79612200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr6:79600200-79619600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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