Variant report

Variant	rs9361481
Chromosome Location	chr6:79726750-79726751
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10806154	0.93[ASN][1000 genomes]
rs11758432	0.89[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs11964204	0.89[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs12192086	0.88[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs1338023	0.88[CHB][hapmap];0.86[JPT][hapmap];0.98[ASN][1000 genomes]
rs2275290	0.88[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs2275291	0.89[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs3805746	0.88[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs3818839	0.89[CHB][hapmap];0.88[JPT][hapmap];0.99[ASN][1000 genomes]
rs3929867	0.97[ASN][1000 genomes]
rs62411261	0.84[ASN][1000 genomes]
rs6908105	0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs6940949	0.83[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs7740307	0.88[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs7750836	0.91[ASN][1000 genomes]
rs7756648	0.91[ASN][1000 genomes]
rs7776138	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs9341753	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs9341760	0.84[ASN][1000 genomes]
rs9343849	0.93[ASN][1000 genomes]
rs9343853	0.94[ASN][1000 genomes]
rs9343859	0.99[ASN][1000 genomes]
rs9343865	0.88[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs9343867	0.80[CHB][hapmap];0.80[JPT][hapmap];0.91[ASN][1000 genomes]
rs9343869	0.84[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs9343875	0.84[ASN][1000 genomes]
rs9343876	0.84[ASN][1000 genomes]
rs9350797	0.88[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs9350801	0.93[ASN][1000 genomes]
rs9352668	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs9352672	0.85[ASN][1000 genomes]
rs9352679	0.80[ASN][1000 genomes]
rs9352685	0.91[ASN][1000 genomes]
rs9352688	0.88[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs9352693	0.82[CHB][hapmap];0.86[ASN][1000 genomes]
rs9352696	0.84[ASN][1000 genomes]
rs9352701	0.82[ASN][1000 genomes]
rs9359361	0.89[CHB][hapmap];0.88[JPT][hapmap];0.98[ASN][1000 genomes]
rs9359366	0.83[ASN][1000 genomes]
rs9361459	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs9361473	0.93[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9361478	0.99[ASN][1000 genomes]
rs9361483	0.92[ASN][1000 genomes]
rs9361497	0.82[ASN][1000 genomes]
rs9443623	0.89[ASN][1000 genomes]
rs9443642	0.88[ASN][1000 genomes]
rs9448581	0.81[EUR][1000 genomes]
rs9448594	0.93[ASN][1000 genomes]
rs9448600	0.88[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs9448601	0.93[ASN][1000 genomes]
rs9448602	0.91[ASN][1000 genomes]
rs9448616	0.88[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs9448647	0.81[ASN][1000 genomes]
rs956550	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs9688928	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv604051	chr6:79691175-79728328	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79687000-79736000	Strong transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:79687000-79736200	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr6:79687200-79735400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:79687200-79741600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:79687600-79775000	Strong transcription	Dnd41	blood
6	chr6:79687800-79736000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:79688400-79742800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:79688400-79744400	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:79689200-79738800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:79704000-79737400	Weak transcription	Right Ventricle	heart
11	chr6:79704600-79730400	Weak transcription	Fetal Intestine Small	intestine
12	chr6:79704600-79786600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:79705000-79738600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:79705200-79732800	Weak transcription	Lung	lung
15	chr6:79706600-79740000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:79706600-79747800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr6:79707400-79731800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:79707400-79737400	Weak transcription	Spleen	Spleen
19	chr6:79707400-79740000	Weak transcription	Small Intestine	intestine
20	chr6:79707400-79755800	Weak transcription	Pancreas	Pancrea
21	chr6:79707400-79786000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:79707400-79786600	Weak transcription	Esophagus	oesophagus
23	chr6:79707800-79745200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:79708200-79732800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:79708200-79741800	Weak transcription	A549	lung
26	chr6:79708800-79769600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:79709000-79733600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:79709000-79737400	Weak transcription	Ovary	ovary
29	chr6:79710800-79774600	Weak transcription	Psoas Muscle	Psoas
30	chr6:79711800-79732200	Weak transcription	NHEK	skin
31	chr6:79711800-79735000	Weak transcription	Colonic Mucosa	Colon
32	chr6:79712200-79741600	Weak transcription	HSMMtube	muscle
33	chr6:79712400-79732000	Weak transcription	HMEC	breast
34	chr6:79712400-79735400	Weak transcription	Brain Substantia Nigra	brain
35	chr6:79713600-79747000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr6:79714000-79730800	Weak transcription	Fetal Muscle Leg	muscle
37	chr6:79714000-79732400	Weak transcription	Thymus	Thymus
38	chr6:79714600-79735800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr6:79714600-79747000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr6:79715800-79732800	Weak transcription	Brain Cingulate Gyrus	brain
41	chr6:79715800-79735400	Weak transcription	Brain Angular Gyrus	brain
42	chr6:79716000-79730400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr6:79717200-79765600	Weak transcription	Colon Smooth Muscle	Colon
44	chr6:79718000-79739600	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr6:79719000-79727800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:79719800-79734200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:79721000-79739000	Strong transcription	Primary B cells from peripheral blood	blood
48	chr6:79721600-79735600	Weak transcription	Fetal Heart	heart
49	chr6:79721800-79729400	Strong transcription	Placenta	Placenta
50	chr6:79722000-79728400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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