Variant report

Variant	rs9448581
Chromosome Location	chr6:79553378-79553379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11758432	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11964204	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12176511	0.99[ASN][1000 genomes]
rs12192086	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1338023	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs2275290	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs2275291	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3805746	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs3818839	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6908105	0.92[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs7740307	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs9341753	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9350797	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs9352668	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9352672	0.87[ASN][1000 genomes]
rs9359361	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9361459	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9361473	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9361481	0.93[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs9443623	0.83[ASN][1000 genomes]
rs9448600	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs9688928	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1839807	chr6:79532610-79606615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79550600-79554000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr6:79550600-79554000	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr6:79551200-79554000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:79552200-79553600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:79552200-79553800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:79552600-79553800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:79552800-79553400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr6:79552800-79553600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:79552800-79553800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:79553200-79554000	Enhancers	H1 Cell Line	embryonic stem cell

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