Variant report

Variant	rs9361459
Chromosome Location	chr6:79572922-79572923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79572341..79575161-chr6:79575433..79577660,3	K562	blood:

Variant related genes	Relation type
ENSG00000146243	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11758432	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11964204	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12176511	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192086	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1338023	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2050660	0.80[CEU][hapmap]
rs2275290	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs2275291	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3805746	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs3818839	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6908105	0.92[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.85[TSI][hapmap];0.90[ASN][1000 genomes]
rs7740307	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap]
rs9341753	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9343849	0.81[ASN][1000 genomes]
rs9343865	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9343867	0.93[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap]
rs9350797	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9352668	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9352672	0.88[ASN][1000 genomes]
rs9359361	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9361473	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9361481	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs9443623	0.84[ASN][1000 genomes]
rs9448581	0.99[ASN][1000 genomes]
rs9448594	0.81[ASN][1000 genomes]
rs9448600	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs9448616	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1839807	chr6:79532610-79606615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv970379	chr6:79571879-79578296	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs9361459	IRAK1BP1	cis	Skin Sun Exposed Lower leg	GTEx
rs9361459	IRAK1BP1	cis	Nerve Tibial	GTEx
rs9361459	IRAK1BP1	cis	Artery Tibial	GTEx
rs9361459	IRAK1BP1	cis	lymphoblastoid	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79555800-79576400	Weak transcription	Left Ventricle	heart
2	chr6:79563000-79576200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:79564200-79576200	Weak transcription	Right Ventricle	heart
4	chr6:79566200-79576400	Weak transcription	Gastric	stomach
5	chr6:79568800-79576400	Weak transcription	Pancreas	Pancrea
6	chr6:79569800-79576800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:79571600-79576400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links