Variant report
| Variant | rs9688928 |
|---|---|
| Chromosome Location | chr6:79634379-79634380 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs10806154 | 0.87[ASN][1000 genomes] |
| rs11758432 | 0.95[ASN][1000 genomes] |
| rs11964204 | 0.87[ASN][1000 genomes] |
| rs12192086 | 0.95[ASN][1000 genomes] |
| rs1338023 | 0.92[ASN][1000 genomes] |
| rs2275290 | 0.87[ASN][1000 genomes] |
| rs2275291 | 0.87[ASN][1000 genomes] |
| rs2321897 | 0.80[ASN][1000 genomes] |
| rs3805746 | 0.86[ASN][1000 genomes] |
| rs3818839 | 0.93[ASN][1000 genomes] |
| rs3929867 | 0.95[ASN][1000 genomes] |
| rs6908105 | 0.89[ASN][1000 genomes] |
| rs7740307 | 0.86[ASN][1000 genomes] |
| rs7750836 | 0.97[ASN][1000 genomes] |
| rs7756648 | 0.97[ASN][1000 genomes] |
| rs9341753 | 0.85[ASN][1000 genomes] |
| rs9343849 | 0.99[ASN][1000 genomes] |
| rs9343853 | 0.96[ASN][1000 genomes] |
| rs9343859 | 0.93[ASN][1000 genomes] |
| rs9343865 | 0.91[ASN][1000 genomes] |
| rs9343867 | 0.89[ASN][1000 genomes] |
| rs9343869 | 0.89[ASN][1000 genomes] |
| rs9350797 | 0.87[ASN][1000 genomes] |
| rs9350801 | 0.91[ASN][1000 genomes] |
| rs9352672 | 0.91[ASN][1000 genomes] |
| rs9352685 | 0.89[ASN][1000 genomes] |
| rs9352688 | 0.89[ASN][1000 genomes] |
| rs9352693 | 0.84[ASN][1000 genomes] |
| rs9359361 | 0.92[ASN][1000 genomes] |
| rs9361473 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9361478 | 0.93[ASN][1000 genomes] |
| rs9361481 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9361483 | 0.90[ASN][1000 genomes] |
| rs9443623 | 0.95[ASN][1000 genomes] |
| rs9443642 | 0.86[ASN][1000 genomes] |
| rs9448581 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9448594 | 0.99[ASN][1000 genomes] |
| rs9448600 | 0.87[ASN][1000 genomes] |
| rs9448601 | 0.87[ASN][1000 genomes] |
| rs9448602 | 0.85[ASN][1000 genomes] |
| rs9448616 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015352 | chr6:79521820-79757024 | Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:79626000-79644000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr6:79629400-79634600 | Weak transcription | Primary T killer memory cells from peripheral blood | blood |
