Variant report

Variant	rs7756648
Chromosome Location	chr6:79627086-79627087
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10806154	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11758432	0.94[ASN][1000 genomes]
rs11964204	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12192086	0.94[ASN][1000 genomes]
rs1338023	0.91[ASN][1000 genomes]
rs2275290	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2275291	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3805746	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3818839	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3929867	0.94[ASN][1000 genomes]
rs6908105	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7740307	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7750836	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9341753	0.84[ASN][1000 genomes]
rs9343849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9343853	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9343859	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9343865	0.90[ASN][1000 genomes]
rs9343867	0.88[ASN][1000 genomes]
rs9343869	0.88[ASN][1000 genomes]
rs9350797	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9350801	0.90[ASN][1000 genomes]
rs9352672	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9352679	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9352685	0.88[ASN][1000 genomes]
rs9352688	0.88[ASN][1000 genomes]
rs9352693	0.84[ASN][1000 genomes]
rs9359361	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9361473	0.85[ASN][1000 genomes]
rs9361478	0.92[ASN][1000 genomes]
rs9361481	0.91[ASN][1000 genomes]
rs9361483	0.89[ASN][1000 genomes]
rs9443623	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9443642	0.85[ASN][1000 genomes]
rs9448594	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9448600	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9448601	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9448602	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9448616	0.90[ASN][1000 genomes]
rs9688928	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7756648	IRAK1BP1	cis	Nerve Tibial	GTEx
rs7756648	IRAK1BP1	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79621200-79627800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:79626000-79644000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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