Variant report

Variant	rs9352679
Chromosome Location	chr6:79683129-79683130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10806154	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11964204	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1338023	0.81[ASN][1000 genomes]
rs2275290	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2275291	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3805746	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3818839	0.81[ASN][1000 genomes]
rs6908105	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7740307	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7750836	0.83[AMR][1000 genomes]
rs7756648	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9343849	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9343853	0.84[AMR][1000 genomes]
rs9343859	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9350797	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9352672	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9359361	0.81[ASN][1000 genomes]
rs9361473	0.86[ASN][1000 genomes]
rs9361478	0.81[ASN][1000 genomes]
rs9361481	0.80[ASN][1000 genomes]
rs9443623	0.81[AMR][1000 genomes]
rs9448594	0.84[AMR][1000 genomes]
rs9448600	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9448601	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9448602	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9352679	IRAK1BP1	cis	Nerve Tibial	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79648800-79714400	Weak transcription	Gastric	stomach
2	chr6:79649000-79715200	Weak transcription	Stomach Mucosa	stomach
3	chr6:79658600-79695000	Weak transcription	Pancreas	Pancrea
4	chr6:79659200-79702800	Weak transcription	Psoas Muscle	Psoas
5	chr6:79659400-79702400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:79659400-79707000	Weak transcription	Esophagus	oesophagus
7	chr6:79659600-79704000	Weak transcription	Lung	lung
8	chr6:79659600-79707000	Weak transcription	Spleen	Spleen
9	chr6:79659800-79684600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:79659800-79702600	Weak transcription	Right Ventricle	heart
11	chr6:79659800-79703400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:79659800-79704000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:79659800-79707000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:79663200-79687200	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:79664200-79695000	Weak transcription	Fetal Stomach	stomach
16	chr6:79664200-79698000	Weak transcription	Fetal Intestine Small	intestine
17	chr6:79664200-79702400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:79669800-79707000	Weak transcription	Aorta	Aorta
19	chr6:79671600-79687400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr6:79671600-79693200	Weak transcription	Thymus	Thymus
21	chr6:79672000-79687600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr6:79672800-79702600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:79675200-79687000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr6:79675200-79687200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:79675200-79687200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:79675200-79689800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:79675200-79690000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:79675200-79693200	Weak transcription	Colonic Mucosa	Colon
29	chr6:79675200-79702200	Weak transcription	Brain Angular Gyrus	brain
30	chr6:79675200-79704600	Weak transcription	Small Intestine	intestine
31	chr6:79675400-79688600	Weak transcription	Fetal Brain Male	brain
32	chr6:79675400-79691800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr6:79675400-79695000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:79675800-79687200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:79675800-79689400	Weak transcription	Fetal Muscle Leg	muscle
36	chr6:79675800-79706800	Weak transcription	NHEK	skin
37	chr6:79676000-79688600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:79676000-79688600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:79676000-79694000	Weak transcription	HSMMtube	muscle
40	chr6:79676000-79703600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr6:79676600-79691200	Weak transcription	NHLF	lung
42	chr6:79676600-79691400	Weak transcription	Osteobl	bone
43	chr6:79678200-79688800	Weak transcription	Left Ventricle	heart
44	chr6:79678400-79687200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr6:79678400-79691400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr6:79678600-79687200	Weak transcription	Colon Smooth Muscle	Colon
47	chr6:79678800-79688800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr6:79679000-79687000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr6:79679000-79687400	Weak transcription	Brain Germinal Matrix	brain
50	chr6:79679000-79688200	Weak transcription	NH-A	brain

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