Variant report

Variant	rs7776138
Chromosome Location	chr6:79794493-79794494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:79790368..79792408-chr6:79792829..79795450,2	MCF-7	breast:
2	chr6:79793888..79796607-chr6:79798630..79801708,3	K562	blood:
3	chr6:79793555..79797386-chr6:79799912..79802613,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10806154	0.83[EUR][1000 genomes]
rs11758432	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11964204	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12192086	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12208017	0.81[CHB][hapmap]
rs1338023	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2275290	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2275291	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs36017295	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805746	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs3818839	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs3929867	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6908105	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs6940949	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs7740307	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7750836	0.81[EUR][1000 genomes]
rs9294130	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs9343853	0.83[EUR][1000 genomes]
rs9343859	0.84[EUR][1000 genomes]
rs9343865	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9343867	0.95[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9343869	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9350797	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs9350801	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9352685	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9352688	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9352693	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9359361	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9361473	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs9361478	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9361481	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs9361483	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9443623	0.83[EUR][1000 genomes]
rs9443642	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9448594	0.83[EUR][1000 genomes]
rs9448600	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs9448616	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs956550	1.00[CHB][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79792400-79794800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:79793400-79794800	Enhancers	Fetal Lung	lung
3	chr6:79793600-79794600	Enhancers	Liver	Liver
4	chr6:79793600-79794800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:79794000-79794600	Enhancers	Adipose Nuclei	Adipose
6	chr6:79794000-79794800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:79794200-79794600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:79794200-79794600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:79794200-79794800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr6:79794200-79794800	Enhancers	NHDF-Ad	bronchial
11	chr6:79794400-79794600	Enhancers	K562	blood
12	chr6:79794400-79794800	Enhancers	HepG2	liver

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