Variant report

Variant	rs6940949
Chromosome Location	chr6:79824035-79824036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79787781..79789616-chr6:79822786..79824625,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146247	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11758432	0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11964204	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1338023	0.94[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2275290	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs2275291	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs36017295	0.82[EUR][1000 genomes]
rs3805746	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs3818839	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3929867	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62411261	0.98[ASN][1000 genomes]
rs7740307	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs7776138	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs9294130	0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs9341760	0.99[ASN][1000 genomes]
rs9343853	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9343859	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9343865	0.94[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9343867	0.81[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9343869	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9343875	0.99[ASN][1000 genomes]
rs9343876	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9350797	0.94[CHB][hapmap];0.93[JPT][hapmap];0.80[EUR][1000 genomes]
rs9350801	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9352685	0.80[EUR][1000 genomes]
rs9352688	0.94[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9352693	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9352696	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9352701	0.97[ASN][1000 genomes]
rs9359361	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9359366	0.98[ASN][1000 genomes]
rs9361473	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs9361478	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9361481	0.83[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs9361483	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9361497	0.97[ASN][1000 genomes]
rs9443642	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9448594	0.80[EUR][1000 genomes]
rs9448600	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs9448616	0.94[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9448647	0.96[ASN][1000 genomes]
rs956550	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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