Variant report
| Variant | rs9359366 |
|---|---|
| Chromosome Location | chr6:79844147-79844148 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11758432 | 0.82[ASN][1000 genomes] |
| rs1338023 | 0.83[ASN][1000 genomes] |
| rs3818839 | 0.84[ASN][1000 genomes] |
| rs3929867 | 0.82[ASN][1000 genomes] |
| rs62411261 | 0.98[ASN][1000 genomes] |
| rs6940949 | 0.98[ASN][1000 genomes] |
| rs9294130 | 0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9341760 | 0.99[ASN][1000 genomes] |
| rs9343859 | 0.84[ASN][1000 genomes] |
| rs9343865 | 0.86[ASN][1000 genomes] |
| rs9343867 | 0.87[ASN][1000 genomes] |
| rs9343869 | 0.87[ASN][1000 genomes] |
| rs9343875 | 0.99[ASN][1000 genomes] |
| rs9343876 | 0.99[ASN][1000 genomes] |
| rs9350801 | 0.86[ASN][1000 genomes] |
| rs9352688 | 0.87[ASN][1000 genomes] |
| rs9352693 | 0.90[ASN][1000 genomes] |
| rs9352696 | 0.99[ASN][1000 genomes] |
| rs9352701 | 0.97[ASN][1000 genomes] |
| rs9359361 | 0.83[ASN][1000 genomes] |
| rs9361478 | 0.84[ASN][1000 genomes] |
| rs9361481 | 0.83[ASN][1000 genomes] |
| rs9361483 | 0.83[ASN][1000 genomes] |
| rs9361497 | 0.97[ASN][1000 genomes] |
| rs9443642 | 0.90[ASN][1000 genomes] |
| rs9448616 | 0.86[ASN][1000 genomes] |
| rs9448647 | 0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs956550 | 0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv518477 | chr6:79700159-79850427 | Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv830706 | chr6:79825910-79994878 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:79843000-79844400 | Strong transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
