Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11758432	0.83[ASN][1000 genomes]
rs1338023	0.84[ASN][1000 genomes]
rs3818839	0.85[ASN][1000 genomes]
rs3929867	0.83[ASN][1000 genomes]
rs62411261	0.99[ASN][1000 genomes]
rs6940949	0.99[ASN][1000 genomes]
rs9294130	0.93[ASN][1000 genomes]
rs9343859	0.85[ASN][1000 genomes]
rs9343865	0.86[ASN][1000 genomes]
rs9343867	0.88[ASN][1000 genomes]
rs9343869	0.88[ASN][1000 genomes]
rs9343875	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9343876	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9350801	0.86[ASN][1000 genomes]
rs9352688	0.88[ASN][1000 genomes]
rs9352693	0.91[ASN][1000 genomes]
rs9352696	1.00[ASN][1000 genomes]
rs9352701	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9359361	0.84[ASN][1000 genomes]
rs9359366	0.99[ASN][1000 genomes]
rs9361478	0.85[ASN][1000 genomes]
rs9361481	0.84[ASN][1000 genomes]
rs9361483	0.84[ASN][1000 genomes]
rs9361497	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9443642	0.91[ASN][1000 genomes]
rs9448616	0.86[ASN][1000 genomes]
rs9448647	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs956550	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv830706	chr6:79825910-79994878	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79844600-79845600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:79845200-79845400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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